View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_22 (Length: 220)
Name: NF8561_low_22
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 45313425 - 45313642
Alignment:
| Q |
9 |
aacattagcttaatttaatactatttcagaatatatccacaagctagggagattgttaacaagttaagttctgaagcacagttaaaagtgatagtcaaca |
108 |
Q |
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| T |
45313425 |
aacattagcttaatttaatactatttcagaatatatacacaagctagggagattgttaacaagttaagttctgaagcacagttaaaagtgatagtcaaca |
45313524 |
T |
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| Q |
109 |
ttcaaaagatgatagaaactaaaaataatcctaccataca------atatcatcataggttaatatcaaaaacagtaaccgtctccttctccttatcctc |
202 |
Q |
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| T |
45313525 |
ttcaaaagatgatagaaactaaaaataatcctaccatacaaatatcatatcatcataggttaatatcaaaaacagtaaccgtctccttctccttatcctc |
45313624 |
T |
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| Q |
203 |
cctggaccccctttcatt |
220 |
Q |
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| T |
45313625 |
cccggaccccctttcatt |
45313642 |
T |
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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 54632182 - 54632078
Alignment:
| Q |
65 |
taacaagttaagttctgaagcacagttaaaagtgatagtcaacattcaaaagatgatagaaactaaaaataatcctaccatacaatatcatcataggtta |
164 |
Q |
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||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
54632182 |
taacaggttaagttctgaaccacagttacaagtgatagtcaacattcaaaagatgatagaaact----ataatcctaccataaaatatcatcataggtta |
54632087 |
T |
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| Q |
165 |
atatcaaaa |
173 |
Q |
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| T |
54632086 |
atatcaaaa |
54632078 |
T |
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