View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_3 (Length: 530)
Name: NF8561_low_3
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 22 - 522
Target Start/End: Original strand, 515029 - 515533
Alignment:
| Q |
22 |
gaggacaaaaaacctaataagtttataggtgttt-tggaaaatttcaagtgcatgagttgttttcaacagctgagagacacattcagttataacattcaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
515029 |
gaggacaaaaaacctaataagtttataggtgtttatggaaaagttcaagtgcatgagttgttttcaacaactgagagacacattcagttataacattcaa |
515128 |
T |
|
| Q |
121 |
aatcatttgaaattctcatcaagtttaaccaaactagctttatgttgacnnnnnnnnn---gtcttagtttcaatgacacttacagcacaattttcactt |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
515129 |
aatcatttgaaattgtcatcaagtttaaccaaactagctttatgttgacttttttttttttgtcttagtttcaatgacacttacagcacaattttcacct |
515228 |
T |
|
| Q |
218 |
tatgctcagttgtgaaggcatatcaatacacctcacttacaagtgtgatgctacttgactgctggtctattccatgtgtcatgctgcttacatggatttt |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
515229 |
tatgcacagttgtgaaggcatatcaatacacctcacttacaagtgtgatgctacttgactgctggtctattccatgcgtcatgctgcttacatggatttt |
515328 |
T |
|
| Q |
318 |
cttgaaaacaaaatatagattcaagaagataactggtgtaattgtttgcatagccggccttgtcctagttgtattttcggatgttcatgctggtgaccgt |
417 |
Q |
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| T |
515329 |
cttgaaaacaaaatatagattcaagaagataactggtgtaattgtttgcatagctggccttgtcctagttgtattttcggatgttcatgctggtgaccgt |
515428 |
T |
|
| Q |
418 |
gcaggtaggtggctttatatcttatgactatacctaaaaacttatgcacacacgtctgatcagtagcatgcatcattccatttatcatgtttgtctgatg |
517 |
Q |
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| T |
515429 |
gccggtaggtggctttatatcttatgactatacctaaaaacttatgcacacacgtctgatcagtagcatgcatcattccatttatcatgtttgtctgatg |
515528 |
T |
|
| Q |
518 |
atgtc |
522 |
Q |
| |
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||||| |
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| T |
515529 |
atgtc |
515533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 64 - 469
Target Start/End: Original strand, 530265 - 530667
Alignment:
| Q |
64 |
ttcaagtgcatgagttgttttcaacagctgagagacacattcagttataacattcaaaatcatttgaaattctcatcaagtttaaccaaactagctttat |
163 |
Q |
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||||||||||| |||||||||| || ||||||||||| | |||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
530265 |
ttcaagtgcataagttgttttctactactgagagacactattagttataacactcaaaatcatttgaaattgtcaaaaagtttaacaaaactagctttat |
530364 |
T |
|
| Q |
164 |
gttgacnnnnnnnnngtcttagtttcaatgacacttacagcacaattttcactttatgctcagttgtgaaggcatatcaatacacctcacttacaagtgt |
263 |
Q |
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| T |
530365 |
gttgactttttctc-gtcttagtttcaatgac--taacagaacaattttcaccttatgtacagttgtgaaggcatatcaatacacctcacttactagtgt |
530461 |
T |
|
| Q |
264 |
gatgctacttgactgctggtctattccatgtgtcatgctgcttacatggattttcttgaaaacaaaatatagattcaagaagataactggtgtaattgtt |
363 |
Q |
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|||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
530462 |
gatgctacctgactgctggtccattccatgcgtcatgcttcttacatggattttcttgaaaacaaaatatagattcaagaagataactggggtaattgtt |
530561 |
T |
|
| Q |
364 |
tgcatagccggccttgtcctagttgtattttcggatgttcatgctggtgaccgtgcaggtaggtggctttatatcttatgactatacctaaaaacttatg |
463 |
Q |
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|||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
530562 |
tgcatagctggccttgttctggttgtattttcggatgttcatgccggtgaccgtgcaggtaggtggctttatgtcttgtgactatacctaaaaacttatg |
530661 |
T |
|
| Q |
464 |
cacaca |
469 |
Q |
| |
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|||||| |
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| T |
530662 |
cacaca |
530667 |
T |
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