View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_5 (Length: 454)
Name: NF8561_low_5
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 42892224 - 42891799
Alignment:
| Q |
13 |
cagagacagcatttcctgaacctcataatcagaagagttttcaggatctctaaagttactttggttggcttcctgttccttgttgaagtgtttaatgaca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42892224 |
cagagacagcatttcctgaacctcataatcagaagagttttcaggatctctaaaattactttggttggcttcctgttgcttgttgaagtgtttaatgaca |
42892125 |
T |
|
| Q |
113 |
atttccccggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgtagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892124 |
atttccccggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgtagag |
42892025 |
T |
|
| Q |
213 |
tatcatcaacaccatagacagacttccccgtatcttgaccgatttcctcaaagtatttttcaatcaagcgtttctcctgaataaacttgacattggacag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892024 |
tatcatcaacaccatagacagacttccccgtatcttgaccgatttcctcaaagtatttttcaatcaagcgtttctcctgaataaacttgacattggacag |
42891925 |
T |
|
| Q |
313 |
aatttcagaagattgttgaatagcctgattaaatcccatctcccctccataagatacatctacaacattaagtagttttgcctgaagacggggatcgaac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42891924 |
aatttcagaagattgttgaatagcctgattaaatcccatctcccctccataagatacatctacaacattaagtagttttgcctgaagacggggatcgaac |
42891825 |
T |
|
| Q |
413 |
atatctgacttactaagctcagtttt |
438 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
42891824 |
atatctgacttactaagctcagtttt |
42891799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 271 - 438
Target Start/End: Complemental strand, 42896811 - 42896644
Alignment:
| Q |
271 |
ttcaatcaagcgtttctcctgaataaacttgacattggacagaatttcagaagattgttgaatagcctgattaaatcccatctcccctccataagataca |
370 |
Q |
| |
|
|||| |||||| |||||||||| |||| || | ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
42896811 |
ttcactcaagcatttctcctgagtaaaatttgctttggacagaatttcagaagatagttcaatagcctgattaaatccatactcccctccataggataca |
42896712 |
T |
|
| Q |
371 |
tctacaacattaagtagttttgcctgaagacggggatcgaacatatctgacttactaagctcagtttt |
438 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
42896711 |
tctacaacaccaagtacttttgcctgaagacggggatcaaacatatctgactgactaagctcagtttt |
42896644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 438
Target Start/End: Complemental strand, 28921530 - 28921116
Alignment:
| Q |
24 |
tttcctgaacctcataatcagaagagttttcaggatctctaaagttactttggttggcttcctgttccttgttgaagtgtttaatgacaatttccccggt |
123 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| || || || ||||||||||| |||||||||||||| |||||||||| ||| || || |
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| T |
28921530 |
tttcctgaacctcataatcagcagcagtttcaggatctctaaaattgctctgcttggcttcctgctccttgttgaagtgcttaatgacaacttcaccagt |
28921431 |
T |
|
| Q |
124 |
agtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgtagagtatcatcaaca |
223 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||| |
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| T |
28921430 |
agtactattttttaaaacatacctattcatatccagattttcccagacaattagtgtctcaacagctccagcatccagagcttgaagtgtatcatcaaca |
28921331 |
T |
|
| Q |
224 |
ccatagacagacttccccgtatcttgaccgatttcctcaaagtatttttcaatcaagcgtttctcctgaataaacttgacattggacagaatttcagaag |
323 |
Q |
| |
|
||| ||||| ||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
28921330 |
ccaaagacatacttcccagtatcctgactgatttcctcaaagtattttccaatcaagcgtttctcctgaatgaacttgacattggacagaatttcagaag |
28921231 |
T |
|
| Q |
324 |
attgttgaatagcctgattaaatcccatctcccctccataagatacatctacaacattaagtagttttgcctgaagacggggatcgaacatatctgactt |
423 |
Q |
| |
|
|| ||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
28921230 |
atagttcaatagcctgattaaacccattctcacctccataagatacatctacaacattaagtatttttgcctgaagacggggatcaaacatatctgactg |
28921131 |
T |
|
| Q |
424 |
actaagctcagtttt |
438 |
Q |
| |
|
||||||||||||||| |
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| T |
28921130 |
actaagctcagtttt |
28921116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 28908372 - 28907947
Alignment:
| Q |
13 |
cagagacagcatttcctgaacctcataatcagaagagttttcaggatctctaaagttactttggttggcttcctgttccttgttgaagtgtttaatgaca |
112 |
Q |
| |
|
||||||| || ||||||||||||||||||||| | | |||||||||||||||| || || | ||||||||||| |||||||||||||| ||||||||| |
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|
| T |
28908372 |
cagagactgcttttcctgaacctcataatcagccgcgctttcaggatctctaaaattgctctcattggcttcctgctccttgttgaagtgcttaatgaca |
28908273 |
T |
|
| Q |
113 |
atttccccggtagtactattttttaaaacatacctagtcatatccagattttcccagacaataagtgtctcaacagctcctgcatccagagcttgtagag |
212 |
Q |
| |
|
| ||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||| |
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|
| T |
28908272 |
acttcaccagtagtactattttttagaacatacctagtcatatccagattttcccatacaataagtgtctcaacagctccagcatcaagatcttgtagag |
28908173 |
T |
|
| Q |
213 |
tatcatcaacaccatagacagacttccccgtatcttgaccgatttcctcaaagtatttttcaatcaagcgtttctcctgaataaacttgacattggacag |
312 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||| ||| |||||| |||||||||||||||||| ||| |||||||||||||||| ||||| || || |
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|
| T |
28908172 |
tatcatcaacgccaacgacgtgcttccccgtattctgattaatttccataaagtatttttcaatcaaacgtgtctcctgaataaactttacattagatag |
28908073 |
T |
|
| Q |
313 |
aatttcagaagattgttgaatagcctgattaaatcccatctcccctccataagatacatctacaacattaagtagttttgcctgaagacggggatcgaac |
412 |
Q |
| |
|
||||||||| ||| ||| |||||||| ||| || || |||||||||||||||||||||| |||||||||| || |||||| |||||| ||||||| ||| |
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|
| T |
28908072 |
aatttcagatgatagtttaatagcctcattgaacccattctcccctccataagatacatcgacaacattaactatttttgcttgaagaaggggatcaaac |
28907973 |
T |
|
| Q |
413 |
atatctgacttactaagctcagtttt |
438 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
28907972 |
atatctgacttgctaagctcagtttt |
28907947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 28898296 - 28898193
Alignment:
| Q |
305 |
ttggacagaatttcagaagattgttgaatagcctgattaaatcccatctcccctccataagatacatctacaacattaagtagttttgcctgaagacggg |
404 |
Q |
| |
|
|||||||||||| |||||||| || ||| |||||||| ||||| ||||| |||||||||||||||| |||||||||| || |||| ||| |||| ||| |
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|
| T |
28898296 |
ttggacagaattccagaagataattcaatggcctgatttaatccattctcctctccataagatacatcgacaacattaactattttttccttaagaaggg |
28898197 |
T |
|
| Q |
405 |
gatc |
408 |
Q |
| |
|
|||| |
|
|
| T |
28898196 |
gatc |
28898193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 28896033 - 28895993
Alignment:
| Q |
331 |
aatagcctgattaaatcccatctcccctccataagatacat |
371 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
28896033 |
aatagcctgattaaatccattctcctctccataagatacat |
28895993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 435
Target Start/End: Original strand, 32763772 - 32763947
Alignment:
| Q |
260 |
tcaaagtatttttcaatcaagcgtttctcctgaataaacttgacattggacagaatttcagaagattgttgaatagcctgattaaatcccatctcccctc |
359 |
Q |
| |
|
||||| |||||| | |||||||||||||| ||||| ||||| ||||| || ||||| || | |||| || |||||| |||||||| || | ||||| | |
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|
| T |
32763772 |
tcaaaatattttcctatcaagcgtttctcttgaatgaacttcacattagatagaatctctgcagataattcaatagcttgattaaagccattttccccac |
32763871 |
T |
|
| Q |
360 |
cataagatacatctacaacattaagtagttttgcctgaagacggggatcgaacatatctgacttactaagctcagt |
435 |
Q |
| |
|
||||||| ||||| || ||||| | || |||||| || | ||| ||||| ||||||||||| | ||| |||||||| |
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|
| T |
32763872 |
cataagagacatcaaccacatttaatatttttgcttgcaaacgaggatcaaacatatctgattgactcagctcagt |
32763947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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