View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_7 (Length: 377)
Name: NF8561_low_7
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 366
Target Start/End: Original strand, 24138164 - 24138530
Alignment:
| Q |
2 |
catgcgttttgcttctggaatgaggaacttagccggggtcatgggaccttggcatgtagattccgggaatatggatgaaagctttgcttcttctctgctg |
101 |
Q |
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| T |
24138164 |
catgcgttttgcttctggaatgaggaacttagccggggtcatgggaccttggcatgtagattccgggaatatggatgaaagctttgcttcttctctgctg |
24138263 |
T |
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| Q |
102 |
gaagagtttaaaagcaataaagccaagtgttttgagctctctgaaattgccggacatgttgttgaattcaggtaaatttgttcaatttttgtctgttgat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24138264 |
gaagagtttaaaagcaataaagccaagtgttttgagctctctgaaattgccggacatgttgttgaattcaggtaaatttgttcaatttttgtcggttgat |
24138363 |
T |
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| Q |
202 |
gc--annnnnnnnngtcgtcttaaaagttaaattgacttaatttacaatcgttggcagtgccgatcaatatggaagccgatttattcaacaaaagcttga |
299 |
Q |
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| T |
24138364 |
gcttttttttttttgtcgtcttaaaagttaacttgacttaatttacgatcgttggcagtgccgatcaatatggaagccgatttattcaacaaaagcttga |
24138463 |
T |
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| Q |
300 |
aacagcaactacagaagnnnnnnncatggtttatcaggaaatcatgccacatgctcttgctttgatg |
366 |
Q |
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| T |
24138464 |
aacagcaactacagaagaaaaaaacatggtttatcaggaaatcatgccacatgctcttgctttgatg |
24138530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 41720485 - 41720657
Alignment:
| Q |
3 |
atgcgttttgcttctggaatgaggaacttagccggggtcatgggaccttggcatgtagattccgggaatatggatgaaagctttgcttcttctctgctgg |
102 |
Q |
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| T |
41720485 |
atgcattttgcttctggaatgaggaatgtagctggggtcatggcaccatggcacctagatgctgtaaacgtagatgaaaactttgcttcgtctctgttgg |
41720584 |
T |
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| Q |
103 |
aagagtttaaaagcaataaagccaagtgttttgagctctctgaaattgccggacatgttgttgaattcaggta |
175 |
Q |
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| T |
41720585 |
aagagtttaaaagcaataaaacaaagtgctttgagctttctgaaatttctggtcatgttgttgaattcaggta |
41720657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 41720753 - 41720868
Alignment:
| Q |
251 |
ttggcagtgccgatcaatatggaagccgatttattcaacaaaagcttgaaacagcaactacagaagnnnnnnncatggtttatcaggaaatcatgccaca |
350 |
Q |
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|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||| |
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| T |
41720753 |
ttggcagtgctgatcaatatggtagccggtttattcaacaaaagcttgaaacagcaaccactgaagaaaagaatatggtttatcaggaaatcacgccaca |
41720852 |
T |
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| Q |
351 |
tgctcttgctttgatg |
366 |
Q |
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|||||||||||||||| |
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| T |
41720853 |
tgctcttgctttgatg |
41720868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 34413703 - 34413804
Alignment:
| Q |
73 |
tggatgaaagctttgcttcttctctgctggaagagtttaaaagcaataaagccaagtgttttgagctctctgaaattgccggacatgttgttgaattcag |
172 |
Q |
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||||||| | |||| ||||||| |||| || || || |||||||||||| |||| |||||||| || || |||||||| || ||||||||||| ||||| |
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| T |
34413703 |
tggatgagaactttccttcttcgttgcttgatgaattcaaaagcaataaaaccaaatgttttgaactttcagaaattgctgggcatgttgttgagttcag |
34413802 |
T |
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| Q |
173 |
gt |
174 |
Q |
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|| |
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| T |
34413803 |
gt |
34413804 |
T |
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