View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8561_low_9 (Length: 364)
Name: NF8561_low_9
Description: NF8561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8561_low_9 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 16280955 - 16280627
Alignment:
| Q |
16 |
tgaataattgaaaagtgtaaagtaatataata---tattgaacaaagtctatttataccatcaatatagatgacgtggatgtgagtactcttatatattc |
112 |
Q |
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|||||||||||||||||| |||||||||| || ||||||||| |||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||| |
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| T |
16280955 |
tgaataattgaaaagtgtgaagtaatatactactatattgaacagagtccatttataccatcaatatggataacgtggatgtgagtgctcttatatattc |
16280856 |
T |
|
| Q |
113 |
ttgcttctactcaatcacttcactagttgttgttgccattctaaccaaactcctgccccacatcatgtcacactttcatcccaagttaggaattataggt |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16280855 |
ttgcttctactcaatcacttcactagttgttg---ccattctaaccaaactcctgccccacatcatgtcacaccttcatcccaagttaggaattataggt |
16280759 |
T |
|
| Q |
213 |
atttccagcttacacaattgagtgggttttgccaaatagttaagtcctatgtatctagttatttgctcgattgttcgtgtttcaattcctttgcatataa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16280758 |
atttccagcttacacaattgagtgggttttgccaaatggttaagtcc----tatctagttatttgctcgattgttcgtgtttcaattcctttgcatataa |
16280663 |
T |
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| Q |
313 |
gctacattctatcttagctaaaatgcaataagaact |
348 |
Q |
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|||||||||||||||||||||||| |||| |||||| |
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| T |
16280662 |
gctacattctatcttagctaaaatacaattagaact |
16280627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 34383739 - 34383771
Alignment:
| Q |
18 |
aataattgaaaagtgtaaagtaatataatatat |
50 |
Q |
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| T |
34383739 |
aataattgagaagtgtaaagtaatataatatat |
34383771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 43355010 - 43354961
Alignment:
| Q |
30 |
gtgtaaagtaatataatatattgaacaaagtctatttataccatcaatat |
79 |
Q |
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| T |
43355010 |
gtgtaaagtaatataatatattgagtggagtctatttataccatcaatat |
43354961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 56628 - 56661
Alignment:
| Q |
18 |
aataattgaaaagtgtaaagtaatataatatatt |
51 |
Q |
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| T |
56628 |
aataattgagaagtgtaaagtaatataatatatt |
56661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 37479233 - 37479266
Alignment:
| Q |
18 |
aataattgaaaagtgtaaagtaatataatatatt |
51 |
Q |
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| T |
37479233 |
aataattgaaaagtttaaagtaatataatatatt |
37479266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 49080823 - 49080790
Alignment:
| Q |
18 |
aataattgaaaagtgtaaagtaatataatatatt |
51 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
49080823 |
aataattgaaaagtgtgaagtaatataatatatt |
49080790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 40095831 - 40095864
Alignment:
| Q |
18 |
aataattgaaaagtgtaaagtaatataatatatt |
51 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
40095831 |
aataattgagaagtgtaaagtaatataatatatt |
40095864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 19993416 - 19993449
Alignment:
| Q |
18 |
aataattgaaaagtgtaaagtaatataatatatt |
51 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
19993416 |
aataattaaaaagtgtaaagtaatataatatatt |
19993449 |
T |
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