View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8562_high_2 (Length: 256)

Name: NF8562_high_2

Description: NF8562

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8562_high_2

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 153; E-Value: 3e-81

Query Start/End: Original strand, 22 - 194

Target Start/End: Original strand, 38362989 - 38363161

Alignment:

Q	22	tttaacccaactagtggggccatgtttttctaaaagaaaaaagaggtaaactgtcatatgaactaaaataatattcgtcaatcttacaacaagtgacttt	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38362989	tttaacccaactagtggtgccatgtttttctaaaagaaaaaagaggtaaactgtcatatgaactaaaataatattcctcaatcttacaacaagtgacttt	38363088	T

Q	122	tggaaaaataaaaatgtccttaaacgaatttcattttctcggtaattaatattgattcatttttgtccacgtg	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	38363089	tggaaaaataaaaatgtccttaaacaaatttcatttcctcggtaattaatattgattcatttttgtccccgtg	38363161	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 202 - 244

Target Start/End: Original strand, 38363287 - 38363328

Alignment:

Q	202	gaaaatattgattcattttttaaaactataacagtagtattat	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38363287	gaaaatattgatt-attttttaaaactataacagtagtattat	38363328	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]