View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8562_low_2 (Length: 573)
Name: NF8562_low_2
Description: NF8562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8562_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 646096 - 646640
Alignment:
| Q |
18 |
aaaccatgaaagacattccgccaatatcgttatgcaatgtcctttacaaaactatctccaaagtgctcgctaatcgtctccgaccgttaatcagtaattg |
117 |
Q |
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| T |
646096 |
aaaccatgaaagacattcggccaatatcgttaagcaatgtcctttacaaaactatctccaaagtgctcgctaatcgtctccgaccgttgattagtaattg |
646195 |
T |
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| Q |
118 |
gatatcaccggagcaggcagctttcattcactcatgctccatcatggataatgctctcacagcttatgaaattcttcaccacatgcgttgtaaaacaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
646196 |
gatatcaccggagcaggcagctttcattcactcacgctccatcatggataatgctctcacagcttatgaaattcttcaccacatgcattgcaaaacaaaa |
646295 |
T |
|
| Q |
218 |
gttaaagctggtgaagttgccttgaagctcgatatatcaaaagcctgtgatagtgtaagttggtcttatctataagcaattctgggcaaattaggctttt |
317 |
Q |
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| T |
646296 |
ggtaaagctggcgaagttgccttgaagctcgatatatcaaaagcctgtgatagtgtaagttggtcttatctataagcaattctgggcaaattaggcttct |
646395 |
T |
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| Q |
318 |
gtcacaaatggataaactggatgatgatgtgtattacttcagttcaataccgtattatttttaatggtgacaatattggacccatcattccgaaacgtgg |
417 |
Q |
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| T |
646396 |
gtcacaaatggataaactggatgatgatgtgtattacttcagttcaataccgtattatttttaatggtgacaatattggacccatcattctgaaacatgg |
646495 |
T |
|
| Q |
418 |
tcttagacaaggttgtcctctctcaccctatctttacataatttgcgcagaaggcctcccagcaatcatcaagaatcatgaatcaaggggtattctccac |
517 |
Q |
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| T |
646496 |
tcttagacaaggttgtcctctctcaccctatctttacataatttgcgcagaaggcctcccagcaatcatcaagaatcatgaatcaaggggtattctccac |
646595 |
T |
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| Q |
518 |
ggcaaccgtatatgtcgcactgcaccctccatcagccaccttctt |
562 |
Q |
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| T |
646596 |
ggcaaccgtatatgttgcactgcaccctccatcagccaccttctt |
646640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 50 - 562
Target Start/End: Complemental strand, 42579248 - 42578737
Alignment:
| Q |
50 |
tgcaatgtcctttacaaaactatctccaaagtgctcgctaatcgtctccgaccgttaatcagtaattggatatcaccggagcaggcagctttcattcact |
149 |
Q |
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| T |
42579248 |
tgcaatgtcctctacaaaattattttaaaagttcttgcaaaccgtcttcgtccgttgatcaataaatggatatctccagagcaggcagcctttttccact |
42579149 |
T |
|
| Q |
150 |
catgctccatcatggataatgctctcacagcttatgaaattcttcaccacatgcgttgtaaaacaaaagttaaagctggtgaagttgccttgaagctcga |
249 |
Q |
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| T |
42579148 |
caagatccatcatggacaatgctctaacggcatttgaaatccttcacaccatgcgctgcaaaactaagggaacaaa-ggtgagattgccttgaaacttga |
42579050 |
T |
|
| Q |
250 |
tatatcaaaagcctgtgatagtgtaagttggtcttatctataagcaattctgggcaaattaggcttttgtcacaaatggataaactggatgatgatgtgt |
349 |
Q |
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| T |
42579049 |
tatatccaaagtcttcgatagcgtaagttggtcttacttacaagcaattcttttcaagatgggattttgttctaaatgggtaaattggatgatgatgtgc |
42578950 |
T |
|
| Q |
350 |
attacttcagttcaataccgtattatttttaatggtgacaatattggacccatcattccgaaacgtggtcttagacaaggttgtcctctctcaccctatc |
449 |
Q |
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| T |
42578949 |
atcacttctattgaatatcatgttatttttaatgcgaaccgtattgggcctattactccggaacgtggtctaagacagggatgccctctctcgccctacc |
42578850 |
T |
|
| Q |
450 |
tttacataatttgcgcagaaggcctcccagcaatcatcaagaatcatgaatcaaggggtattctccacggcaaccgtatatgtcgcactgcaccctccat |
549 |
Q |
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| T |
42578849 |
tttatattatttgtgcagaaggtctttccgcaatcattaaaaatcatgaattaagaggcactcttcacggaaaccgtatttgtcgcgctgcaccatccat |
42578750 |
T |
|
| Q |
550 |
cagccaccttctt |
562 |
Q |
| |
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| T |
42578749 |
cagccatcttctt |
42578737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 51142247 - 51142178
Alignment:
| Q |
411 |
aacgtggtcttagacaaggttgtcctctctcaccctatctttacataatttgcgcagaaggcctcccagc |
480 |
Q |
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| T |
51142247 |
aacgtggtcttcgacaaggttgttcgctctcaccctatctgtatatcatctgtgcagaaggcctctcagc |
51142178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 13190700 - 13190651
Alignment:
| Q |
155 |
tccatcatggataatgctctcacagcttatgaaattcttcaccacatgcg |
204 |
Q |
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| T |
13190700 |
tccatcatggataatgctttaacagcatttgaaattcttcaccatatgcg |
13190651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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