View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8562_low_3 (Length: 367)
Name: NF8562_low_3
Description: NF8562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8562_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 311
Target Start/End: Complemental strand, 7354104 - 7353801
Alignment:
| Q |
3 |
cctctcccaatgcttcccctgcaagccttgcttctttcattctttcacaccatttttctctcctttcctttcaatcgtttcacgttggtttgtcgatgct |
102 |
Q |
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| T |
7354104 |
cctctccaaatacttcccctgcaaaccctgcttctttcattctttcacaccatttttctctcctttcgtt-----catttcacgctggtttgtcaatgct |
7354010 |
T |
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| Q |
103 |
tttgcagcctcacctttcatcattctcctttcatcgttgtcacggtttttaaatgtcgaactggttgaatctaaaaacctccataagcactccactcttc |
202 |
Q |
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||||||||||| |||| ||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7354009 |
tttgcagcctcgccttccatcattttcctttcatcactgtcacggtttttgaatgccgaactggttgaatctaaaaacctccataagtactccactcttc |
7353910 |
T |
|
| Q |
203 |
gagagaatccagcagcgaaatcgccacaagtactgtagcagcactccatgttgttctcccttaatatcacccatttaggctccatgcctctcaacaccga |
302 |
Q |
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| T |
7353909 |
gtgagaatccagtggcgaaatcgccacaactactgcagcaacactccatgttgttctcacttaatatcacccctttaggctccatgcctctcaacacctt |
7353810 |
T |
|
| Q |
303 |
cagaaactc |
311 |
Q |
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||||||||| |
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| T |
7353809 |
cagaaactc |
7353801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 38549065 - 38549168
Alignment:
| Q |
3 |
cctctcccaatgcttcccctgcaagccttgcttctttcattctttcacaccatttttctctcctttcctttcaatcgtttcacgttggtttgtcgatgct |
102 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38549065 |
cctctccaaatgcttcccctgcaagccttgcttctttcattctttcacaccatttttctctcctttcctttcaatcgtttcacgttggtttgtcgatgct |
38549164 |
T |
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| Q |
103 |
tttg |
106 |
Q |
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|||| |
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| T |
38549165 |
tttg |
38549168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 38549168 - 38549219
Alignment:
| Q |
301 |
gacagaaactcgctgtgttcagacattggagttggacttgaactgcactcaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38549168 |
gacagaaactcgctgtgttcagacattggagttggacttgaactgcactcaa |
38549219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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