View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8562_low_4 (Length: 256)

Name: NF8562_low_4

Description: NF8562

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8562_low_4

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 153; E-Value: 3e-81

Query Start/End: Original strand, 22 - 194

Target Start/End: Original strand, 38362989 - 38363161

Alignment:

Q	22	tttaacccaactagtggggccatgtttttctaaaagaaaaaagaggtaaactgtcatatgaactaaaataatattcgtcaatcttacaacaagtgacttt	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38362989	tttaacccaactagtggtgccatgtttttctaaaagaaaaaagaggtaaactgtcatatgaactaaaataatattcctcaatcttacaacaagtgacttt	38363088	T

Q	122	tggaaaaataaaaatgtccttaaacgaatttcattttctcggtaattaatattgattcatttttgtccacgtg	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	38363089	tggaaaaataaaaatgtccttaaacaaatttcatttcctcggtaattaatattgattcatttttgtccccgtg	38363161	T

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Target: chr7; HSP #2

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 202 - 244

Target Start/End: Original strand, 38363287 - 38363328

Alignment:

Q	202	gaaaatattgattcattttttaaaactataacagtagtattat	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38363287	gaaaatattgatt-attttttaaaactataacagtagtattat	38363328	T

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