View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8562_low_6 (Length: 217)

Name: NF8562_low_6
Description: NF8562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8562_low_6
NF8562_low_6
[»] chr1 (4 HSPs)
chr1 (19-134)||(51848993-51849108)
chr1 (63-133)||(24136809-24136879)
chr1 (79-134)||(18540960-18541015)
chr1 (78-134)||(32811768-32811824)
[»] chr4 (10 HSPs)
chr4 (59-134)||(53356962-53357037)
chr4 (64-134)||(51540737-51540807)
chr4 (59-133)||(12241169-12241243)
chr4 (79-134)||(40756032-40756087)
chr4 (62-133)||(29406925-29406996)
chr4 (59-134)||(39880915-39880990)
chr4 (62-119)||(4489687-4489744)
chr4 (23-56)||(42132707-42132740)
chr4 (78-134)||(25725598-25725654)
chr4 (62-134)||(30890173-30890245)
[»] chr8 (7 HSPs)
chr8 (63-134)||(35819048-35819119)
chr8 (63-134)||(40719533-40719604)
chr8 (62-133)||(31806411-31806482)
chr8 (63-133)||(30608599-30608669)
chr8 (60-134)||(39153570-39153644)
chr8 (63-132)||(34494527-34494596)
chr8 (62-134)||(34996248-34996320)
[»] chr7 (6 HSPs)
chr7 (61-134)||(21153163-21153236)
chr7 (62-134)||(36920896-36920968)
chr7 (63-134)||(33212137-33212208)
chr7 (78-134)||(42640954-42641010)
chr7 (59-134)||(44596029-44596104)
chr7 (62-134)||(6822423-6822495)
[»] chr6 (1 HSPs)
chr6 (62-131)||(15098852-15098921)
[»] chr3 (8 HSPs)
chr3 (58-134)||(40159710-40159786)
chr3 (62-133)||(50745472-50745543)
chr3 (63-133)||(31017286-31017355)
chr3 (63-134)||(11335191-11335262)
chr3 (51-134)||(47988362-47988445)
chr3 (51-134)||(47997649-47997732)
chr3 (51-134)||(48006936-48007019)
chr3 (62-134)||(51032514-51032586)
[»] chr2 (6 HSPs)
chr2 (63-134)||(44059512-44059583)
chr2 (79-134)||(31635715-31635770)
chr2 (79-131)||(11980763-11980815)
chr2 (61-134)||(16051276-16051348)
chr2 (62-134)||(4723677-4723749)
chr2 (78-134)||(41868273-41868329)
[»] chr5 (2 HSPs)
chr5 (63-134)||(36415951-36416022)
chr5 (61-121)||(20125514-20125574)
[»] scaffold0001 (1 HSPs)
scaffold0001 (65-134)||(404859-404928)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 51849108 - 51848993
Alignment:
Q  19 ttaactactccctacctctcataataactgagtcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttc 118  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51849108 ttaactactccctacgtctcataataactgagtcatttttaatagagtagtgatgtatatacaactctttggtacaacctctatgacaactttgattttc 51849009  T
Q  119 tcttatttgattggtc 134  Q
    ||||||||||||||||    
T  51849008 tcttatttgattggtc 51848993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 24136809 - 24136879
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    |||||||||| | ||||||||||||| ||||||  | |||||||| |||| ||||||||||||||||||||    
T  24136809 gagtagtgatatttatacaactttttagtacaatttttatgacaaatttgtttttctcttatttgattggt 24136879  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 18540960 - 18541015
Alignment:
Q  79 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  18540960 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 18541015  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 32811768 - 32811824
Alignment:
Q  78 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||| ||| ||||||| |  |||||||||||| |||||||| ||||||||||||    
T  32811768 tacaactctttagtacaactttaatgacaactttggttttctctcatttgattggtc 32811824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 53356962 - 53357037
Alignment:
Q  59 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  53356962 aatagagtagtgatatatgtacaactctttggtacaacttctatgacaactttgattgtctctcatttgattggtc 53357037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 51540737 - 51540807
Alignment:
Q  64 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||||| ||||||||||| ||||||||||| | |||||||| |||| ||||||||  |||||||||||    
T  51540737 agtagtgatatatatacaactctttggtacaacttttatgacaattttggttttctctcttttgattggtc 51540807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 12241243 - 12241169
Alignment:
Q  59 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    |||||||||||||| | | ||||||| ||| ||||||||| ||||||||||||  ||||||||  ||||||||||    
T  12241243 aatagagtagtgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctcttttgattggt 12241169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 40756087 - 40756032
Alignment:
Q  79 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  40756087 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 40756032  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 29406925 - 29406996
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||| |||| ||||||||  ||||||||||    
T  29406925 agagtagtgatatatgtacaactctttggtacaactttcatgacaattttggttttctctattttgattggt 29406996  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 39880915 - 39880990
Alignment:
Q  59 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||| |||||||| ||| ||||||| ||| ||||||| |  |||||||||||| ||||||||  |||||||||||    
T  39880915 aatagcgtagtgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgattggtc 39880990  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 4489687 - 4489744
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttct 119  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||||||| |||||||    
T  4489687 agagtagtgatatatgtacaactctttggtacaactttcatgacaactttaattttct 4489744  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 42132707 - 42132740
Alignment:
Q  23 ctactccctacctctcataataactgagtcattt 56  Q
    ||||||||||| ||||||||||||||||||||||    
T  42132707 ctactccctacatctcataataactgagtcattt 42132740  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 25725598 - 25725654
Alignment:
Q  78 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| ||||||    
T  25725598 tacaactcttttgtacaacctttatgacaactttgtttttctatcatttggttggtc 25725654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 30890173 - 30890245
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||| |||||| ||| ||||||| ||||||||||  | ||||||||||||| ||||||||  ||||| |||||    
T  30890173 agagcagtgatatatgtacaactctttggtacaatttttatgacaactttggttttctctattttgactggtc 30890245  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 35819119 - 35819048
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
T  35819119 gagtagtgatctatgtacaactttttggtacaacttctatgacaattttgattgtctctcatttgattggtc 35819048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 40719533 - 40719604
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||| ||| ||||||| ||| ||||||| | ||||||||||||| ||||||||  |||||||||||    
T  40719533 gagtagtgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgattggtc 40719604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 31806482 - 31806411
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    ||||||||||| ||| || |||| ||||||||||| | ||| ||||||||  |||||||| |||||||||||    
T  31806482 agagtagtgatatatgtataactctttggtacaacttttattacaactttagttttctctcatttgattggt 31806411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 30608599 - 30608669
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    |||||||||| | | ||||||| ||| ||||||||| ||||||||||||| |||||| |  ||||||||||    
T  30608599 gagtagtgatatttgtacaactcttttgtacaacctttatgacaactttgtttttctatcttttgattggt 30608669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 39153570 - 39153644
Alignment:
Q  60 atagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||||||||| ||| ||||||| ||| ||| ||| |  |||| ||||||||||||||||  |||||||||||    
T  39153570 atagagtagtgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgattggtc 39153644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 34494527 - 34494596
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattgg 132  Q
    |||||||||| | | |||| || ||| |||||||   ||||||||||||||||||||||| |||||||||    
T  34494527 gagtagtgatatttgtacatctctttagtacaactcttatgacaactttgattttctcttctttgattgg 34494596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 34996248 - 34996320
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||||||| |||| ||||  ||| |||||||    
T  34996248 agagtagtgatatatgtacaactatttggtacaactttgatgacaactttcatttgctctcttttcattggtc 34996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 21153236 - 21153163
Alignment:
Q  61 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||||| ||| ||||||||||||||||||| |  |||||||||||||||||||||  |||||||||||    
T  21153236 tagagtagtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgattggtc 21153163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 36920968 - 36920896
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||||||| ||| ||||||| ||||||||||| | ||| |||||||||||||||||| ||||||||||||    
T  36920968 agagtagtgatatatgtacaactctttggtacaacttttattacaactttgattttctctcatttgattggtc 36920896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 33212208 - 33212137
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||| ||||| ||||||||||||    
T  33212208 gagtagtgatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtc 33212137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 42641010 - 42640954
Alignment:
Q  78 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||    
T  42641010 tacaactctttggtacaacttttatgataactttgattttctcttttttgattggtc 42640954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 44596029 - 44596104
Alignment:
Q  59 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||||||| | | || || | ||||||||||  | ||||||||||||| |||||||| ||||||||||||    
T  44596029 aatagagtagtgatatttgtataattctttggtacaaattttatgacaactttggttttctctcatttgattggtc 44596104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 6822423 - 6822495
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    ||||||||||| | || |||| ||||||||||||| ||| || ||||||||| ||||||||| |||||||||||    
T  6822423 agagtagtgatatttaaacaagtttttggtacaac-tctttggacaactttggttttctcttctttgattggtc 6822495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 15098921 - 15098852
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattg 131  Q
    ||||| ||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  15098921 agagttgtgatatatgtacaattttttggtacaacttctatgacaactttgattttctctcatttgattg 15098852  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 40159710 - 40159786
Alignment:
Q  58 caatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||||||||||| ||| ||||||| ||||||||||| |  |||||||||||| ||||||||  |||||||||||    
T  40159710 caatagagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtc 40159786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 50745543 - 50745472
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    |||||||| || ||| ||||||| ||||||||||| |||||||||||||| ||| ||||| |||||||||||    
T  50745543 agagtagtaatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggt 50745472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 31017286 - 31017355
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 133  Q
    |||||||||| ||| ||||||| |||| || ||| |||||||||||||||||||||||| |||||||||||    
T  31017286 gagtagtgatatatgtacaactctttgata-aacttctatgacaactttgattttctctcatttgattggt 31017355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 11335191 - 11335262
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||| ||| ||||||| ||||||||||| | ||| ||||||||  |||||||| ||||||||||||    
T  11335191 gagtagtgatatatgtacaactctttggtacaacttttattacaactttagttttctctcatttgattggtc 11335262  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 47988362 - 47988445
Alignment:
Q  51 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  47988362 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 47988445  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 47997649 - 47997732
Alignment:
Q  51 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  47997649 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 47997732  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 48006936 - 48007019
Alignment:
Q  51 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  48006936 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 48007019  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 51032514 - 51032586
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||||||| ||| |||||||||||  |||||| |  ||||||||||| ||||||| |  |||||||||||    
T  51032514 agagtagtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgattggtc 51032586  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 44059583 - 44059512
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||| | | ||||||||||||||||||| ||| ||||||||||| |||||||| | ||||||||||    
T  44059583 gagtagtgatatttgtacaactttttggtacaacttctgtgacaactttggttttctctcaattgattggtc 44059512  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 31635715 - 31635770
Alignment:
Q  79 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 134  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  31635715 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 31635770  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 11980815 - 11980763
Alignment:
Q  79 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattg 131  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| ||||||||    
T  11980815 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattg 11980763  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 16051276 - 16051348
Alignment:
Q  61 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||||| | | |||| ||||||||||||||   |||||||||||| | |||||||| |||||||||||    
T  16051276 tagagtagtgatatttgtacatctttttggtacaactcttatgacaacttt-aatttctcttttttgattggtc 16051348  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 4723749 - 4723677
Alignment:
Q  62 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||| |||||| ||| ||||||| ||||||||||| | ||| ||||||||  ||||||||  |||||||||||    
T  4723749 agagcagtgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgattggtc 4723677  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 41868273 - 41868329
Alignment:
Q  78 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    ||||||| |||| |||||| | || |||||||||| ||||||| |||||||||||||    
T  41868273 tacaactctttgatacaacttttacgacaactttggttttctcatatttgattggtc 41868329  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 36415951 - 36416022
Alignment:
Q  63 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||||| ||| ||||||| ||||||||||| |  |||||||||||| ||||||||  |||||||||||    
T  36415951 gagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtc 36416022  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 20125574 - 20125514
Alignment:
Q  61 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctct 121  Q
    |||||| ||||| ||||||||||| ||||| ||||| |  ||||||||||| |||||||||    
T  20125574 tagagtggtgatatatatacaactatttgggacaactttgatgacaactttcattttctct 20125514  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 404928 - 404859
Alignment:
Q  65 gtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 134  Q
    |||||||| | | ||||||| ||||||||||| | ||||||||||||| ||||||||| || ||||||||    
T  404928 gtagtgatatttgtacaactctttggtacaacttttatgacaactttgtttttctcttcttcgattggtc 404859  T

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