View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_high_1 (Length: 644)
Name: NF8563_high_1
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Original strand, 3609031 - 3609648
Alignment:
| Q |
18 |
cttggatccaagttgttgttctgagaggatggaaacatggcactaaaaacacgtttttatcattaatcttattcttgtttttgagagtggatggaagaag |
117 |
Q |
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| T |
3609031 |
cttggatccaagttgttgttctgagaggatggaaacatggcactaaaagcacgtttttatcattaatcttattcttgtttttgagagtggatggaagaag |
3609130 |
T |
|
| Q |
118 |
tgacagaggtgtgaatttcctttccacttttgaaggcttccataaatggcagagaatggcataggccatgagaaaggttggtggatcaatgatcactcga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3609131 |
tgacagaggtgtgaatttcctttccacttttgaaggcttccataaatggcagagaatggcataggccatgagaaaggttggtggatcaatgatcactcga |
3609230 |
T |
|
| Q |
218 |
aaaatcgcagtgaaatagcggcatcgtgaagatcacaaccaagctctgataccatattaagattttgagcataagaagnnnnnnngagctttataaatca |
317 |
Q |
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| T |
3609231 |
aaaatcacagtgaaataacggcatcatgaagatcacaaccaggctctgataccatattaaaattttgagcataagaagaaaaaaagagctttataaatca |
3609330 |
T |
|
| Q |
318 |
agtgaaagtaagatacataaaaaattatattgatcaaaagacagtgaatgagtatatgagatgctctatatatagtgtgtttgtgagacat----aaact |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3609331 |
agtgaaagtaagatacataaaaaattatattgatcaaaagacgatgaatgagtatatgagatgctctatatatagtgtgtttgtgagacataaacaaact |
3609430 |
T |
|
| Q |
414 |
aactgacctttataagaaactctaactagctaactaaattttaacaaactccatatatctaataatatgttacatatcgaataaaaaagtgaatggtgaa |
513 |
Q |
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| T |
3609431 |
aactgacctttataagaaactctaactagctaactaaattttaacaaactctatatatctaataatatgttccatatcgaataaaaaagtgaatggtgaa |
3609530 |
T |
|
| Q |
514 |
ccctttataaatgagataatctataaacttaatgtgttaaggttttgggttaattaaaatgtgtgnnnnnnncacttgtattataattattcaaagtccg |
613 |
Q |
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| T |
3609531 |
ccctttataagtgagataacctataaacttaatgtgttaaggttttgagttaattaaaatgtgtg-ttttttcacttgtattataattgttcaaagcccg |
3609629 |
T |
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| Q |
614 |
atagtagcctcacaggttc |
632 |
Q |
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| T |
3609630 |
atagtagcctcaaaggttc |
3609648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 11400649 - 11400718
Alignment:
| Q |
497 |
aaaaagtgaatggtgaaccctttataaatgagataatctataaacttaatgtgttaaggttttgggttaa |
566 |
Q |
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| T |
11400649 |
aaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatgtcttaaggttttgagttaa |
11400718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 3608747 - 3608842
Alignment:
| Q |
322 |
aaagtaagatacataaaaaattatattgatcaaaagacagtgaatgagtatatgagatgctctatatatagtgtgtttgtgagacataaactaact |
417 |
Q |
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| T |
3608747 |
aaagtaaaattcatagaaaattataatgatcaaaatatattgaatgaatacatgagatgctttatatataaagagcttgtgagacattaacaaact |
3608842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 39219705 - 39219773
Alignment:
| Q |
138 |
tttccacttttgaaggcttccataaatggcagagaatggcataggccatgagaaaggttggtggatcaa |
206 |
Q |
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| T |
39219705 |
tttccatttttgaaatcttccataaatggcagagaatggaataggccgtgataaatcttggtggatcaa |
39219773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 36572237 - 36572294
Alignment:
| Q |
307 |
tttataaatcaagtgaaagtaagatacataaaaaattatattgatcaaaagacagtga |
364 |
Q |
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||||||| |||||||||||||| || || ||||||||||||||||||||| ||||| |
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| T |
36572237 |
tttataactcaagtgaaagtaaaatttattgaaaattatattgatcaaaagatagtga |
36572294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 34451711 - 34451763
Alignment:
| Q |
425 |
ataagaaactctaactagctaactaaattttaacaaactccatatatctaata |
477 |
Q |
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| T |
34451711 |
ataacaaactctaactaaccaactaaattttaactaactctatatttctaata |
34451763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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