View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_high_17 (Length: 201)
Name: NF8563_high_17
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 29317697 - 29317522
Alignment:
| Q |
20 |
actggcaccctaaaaatagggtagtggtattatattttttaaatacataaaaatcaaaataaattgcaaactaatgcacatgattttttc--gnnnnnnn |
117 |
Q |
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| T |
29317697 |
actggcaccctaaaaatagggtagtggtattatattttttaaatacataaaaatcaaaataaattgcaaactaatgcacatgattttttcaaaaataaaa |
29317598 |
T |
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| Q |
118 |
nnnnnnntgcacttcatattgttcctatctgttcgttgtttttcatcggtacgtagtgttgttgtaccaccaaact |
193 |
Q |
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| T |
29317597 |
ttaaaaatgcacttcatattgttcctatctgttcgttgtttttcatcggtacgtagtgttgttgtaccatcaaact |
29317522 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 41553043 - 41552990
Alignment:
| Q |
42 |
agtggtattatattttttaaatacataaaaatcaaaataaattgcaaactaatg |
95 |
Q |
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| T |
41553043 |
agtggtattattttttcaaaatacataaaagtcaaaataaactgcaatctaatg |
41552990 |
T |
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