View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_high_6 (Length: 382)
Name: NF8563_high_6
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 40314814 - 40315162
Alignment:
| Q |
6 |
gttgtgttttgattacttcatctttcctcgttttgagatctattgtatttgttggnnnnnnncttgtttggtgaaagacgctcttgagatgttcgtggaa |
105 |
Q |
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| T |
40314814 |
gttgtgttttgattacttcatctttcctcgttttgagatctattgtatttgttggtgtttttcttgtttggtgaaagacgctcttgagatgttcgtggaa |
40314913 |
T |
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| Q |
106 |
atgcccacaaaaccaacacgccaacaaaccattgtgtgtgtagagaatcttgtagccgaatccttct--cnnnnnnnngtttactctactacaatcaatt |
203 |
Q |
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| T |
40314914 |
atgcccacaaaaccaacacgccaataaaccattgtgtgtgtagagaatcttgtagccgaatccttcttctttttttttgtttactctactaca------- |
40315006 |
T |
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| Q |
204 |
ggtctcttatcaatggttaaaggtggacttttgtgcgaccattaaaagtcaaattgtgtctgcactaaatacaatttatcttaactagttaagtgttaaa |
303 |
Q |
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| T |
40315007 |
--------atcaatggttaaaggtggacttttgtgcgaccattaaaagtcaaattgtgtctacagtgaatacaatttgtcttaactagttaagtgttaaa |
40315098 |
T |
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| Q |
304 |
attgtgacgtatcatctctcttatatccaagaccgacagaggaagcaattgatttgttggatgt |
367 |
Q |
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| T |
40315099 |
attatgatgtatcatctctcttatatccaagaccgacagaggaagcaattgatttgttggatgt |
40315162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 1499404 - 1499759
Alignment:
| Q |
7 |
ttgtgttttgattacttcatctttcctcgttttgagatctattgtatttgttggnnnnnnn-cttgtttggtgaaagacgctcttgagatgttcgtggaa |
105 |
Q |
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| T |
1499404 |
ttgtgttttgattatttcatctttccatattttgagatctattgcatttgttcgtgttttttctcattttgtgaaggatgctcttgagttgtttgtggaa |
1499503 |
T |
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| Q |
106 |
atgcccacaaaaccaacacgccaacaaaccattgtgtgtgtagagaatcttgtagccgaatccttctcnnnnnnnngtttactctactacaatcaattgg |
205 |
Q |
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| T |
1499504 |
atggccataaaatcaacacaccgacaaaccattgtgtgcgcaaagaatcttgtgagcgaatcctttt-----gtttggttactctcctacaattaattgg |
1499598 |
T |
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| Q |
206 |
tctcttatcaatggttaaaggtggacttttgtgcgaccattaaaagtcaaattgtgtctgcactaaatacaatttatcttaactagttaagtgttaaaat |
305 |
Q |
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| T |
1499599 |
tttctaatcaaaggtttaagatggacttttgcaaaaccattaaaagtcaaatcgtgtttgcaacgaatacaatttgtcataactgaataagttttacgac |
1499698 |
T |
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| Q |
306 |
tgtgacgtatcatctctcttatatccaagaccgacagaggaagcaattgatttgttggatg |
366 |
Q |
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| T |
1499699 |
tgtggcgtctcatctcttctatgtccaagatcgactgaggaagcgattgatttgttggatg |
1499759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 31983375 - 31983448
Alignment:
| Q |
95 |
tgttcgtggaaatgcccacaaaaccaacacgccaacaaaccattgtgtgtgtagagaatcttgtagccgaatcc |
168 |
Q |
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| T |
31983375 |
tgttcgtgaaaatgcccataaaatcaacacgtcaacaaaccattgtatgtgtagagaatcttgtgaccgaatcc |
31983448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 31983284 - 31983326
Alignment:
| Q |
7 |
ttgtgttttgattacttcatctttcctcgttttgagatctatt |
49 |
Q |
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| T |
31983284 |
ttgtgtttttattacttcatatttccttgttttgagatctatt |
31983326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 6596046 - 6596005
Alignment:
| Q |
5 |
tgttgtgttttgattacttcatctttcctcgttttgagatct |
46 |
Q |
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| T |
6596046 |
tgttgtgtttttattactttatatttcctcgttttgagatct |
6596005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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