View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8563_high_7 (Length: 375)
Name: NF8563_high_7
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_high_7 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 39844890 - 39845248
Alignment:
| Q |
1 |
cttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39844890 |
cttccttcattgtaacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatttaattattcattgggaa |
39844989 |
T |
|
| Q |
101 |
tgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgg |
200 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39844990 |
tgttggagt-gggggatctattaataagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggaaggcgagaaatgaccgg |
39845088 |
T |
|
| Q |
201 |
atttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39845089 |
atttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgatgtcttggaggttgctcttaggtagattcaatgttccggcgtgta |
39845188 |
T |
|
| Q |
301 |
tgttttatgaatggagttggtgcctccgagattgtttgttgaggtaagatttggatgtcc |
360 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39845189 |
tgttttatgaatggagttggtgcccccgagattgtttgttgaggtaaggtttggttgtcc |
39845248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 22196955 - 22197217
Alignment:
| Q |
2 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
101 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| | |||||| || || |||||||||||| ||||| | ||||| | |||| |||||| | | |
|
|
| T |
22196955 |
ttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaacctttttatccattggaagt |
22197054 |
T |
|
| Q |
102 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgga |
201 |
Q |
| |
|
|||||||| ||||| || ||| |||||| ||||||| || || || ||||| ||||||| | |||||||||||||||| || ||||||||||| | |
|
|
| T |
22197055 |
gttggagt-gggggtccttttattaagaaagttcggaacgggttacgaatgatttgggaggccgggatttgggtgatttggaaggctagaaatgaccgaa |
22197153 |
T |
|
| Q |
202 |
tttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggag |
265 |
Q |
| |
|
|||||||||||| | ||| || ||||||| | | |||||||||||||||||| |||| ||||| |
|
|
| T |
22197154 |
tttttaataatgttattgctagatgggatgtgctagtggaggaggtaaaagtgttgtcgtggag |
22197217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 22240866 - 22240604
Alignment:
| Q |
2 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
101 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| | |||||| || || |||||||||||| ||||| | ||||| | |||| |||||| | | |
|
|
| T |
22240866 |
ttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaacctttttatccattggaagt |
22240767 |
T |
|
| Q |
102 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgga |
201 |
Q |
| |
|
|||||||| ||||| || ||| |||||| ||||||| || || || ||||| ||||||| | |||||||||||||||| || ||||||||||| | |
|
|
| T |
22240766 |
gttggagt-gggggtccttttattaagaaagttcggaacgggttacgaatgatttgggaggccgggatttgggtgatttggaaggctagaaatgaccgaa |
22240668 |
T |
|
| Q |
202 |
tttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggag |
265 |
Q |
| |
|
|||||||||||| | ||| || ||||||| | | |||||||||||||||||| |||| ||||| |
|
|
| T |
22240667 |
tttttaataatgttattgctagatgggatgtgctagtggaggaggtaaaagtgttgtcgtggag |
22240604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 1547614 - 1547974
Alignment:
| Q |
1 |
cttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1547614 |
cttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatttaattattcattgggaa |
1547713 |
T |
|
| Q |
101 |
tgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgg |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
1547714 |
tgttggagt-gggggatctattaacaagaaaatttggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggaaggcgagaaatggccgg |
1547812 |
T |
|
| Q |
201 |
atttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1547813 |
atttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgatgtcttgaaggttgctcttaggtagattcaatgttccggcgtgta |
1547912 |
T |
|
| Q |
301 |
tgttttatgaatggagttggtgcctccgagattgtttgttgaggtaagatttggatgtccat |
362 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
1547913 |
tgttttatgaatggagttggtgcccccaagattgtttgttgaggtaaggtttggttgtccat |
1547974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 52613054 - 52612790
Alignment:
| Q |
2 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
101 |
Q |
| |
|
|||||||||||||| | | |||||||||||||| ||||||||||||||| | |||||||||||| ||||| | || ||||| | ||||||||||| | |
|
|
| T |
52613054 |
ttccttcattgtgatctcggaaggaatgtttggttaaatgtgatgttgtggctcgatttgaattttataatgccgccaaatttgttaattcattgggagt |
52612955 |
T |
|
| Q |
102 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgga |
201 |
Q |
| |
|
||||||| |||||||| || | ||||| ||||||||||||||| | ||||| ||||||||||| |||||||| | |||| |||||| ||||| || | |
|
|
| T |
52612954 |
gttggag-tgggggattgatacataagaagattcggaagggattgaggatgatttgggaggtggtgatttgggttttgtggaaagcgaggaatgatcgta |
52612856 |
T |
|
| Q |
202 |
tttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggt |
267 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| | |||||| |||| |||||| |||| ||||||| |
|
|
| T |
52612855 |
ttttcaataatgagaatgctccatgggatgagcttgtggagaaggtgaaagtgttgtcatggaggt |
52612790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 267
Target Start/End: Complemental strand, 42773903 - 42773724
Alignment:
| Q |
87 |
ttattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacag |
186 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||| |||||| | || || || ||||||||||| ||||||| || |||||||| ||||||| | |
|
|
| T |
42773903 |
ttattcattgggagtgttggagt-gggggatctcttaagaagaaagtccgtaatggtttgcgtatgatttgggaggccgtgatttgggtaatttggaagg |
42773805 |
T |
|
| Q |
187 |
cgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggt |
267 |
Q |
| |
|
| |||||||| | ||||| || |||| | ||| | |||| |||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
42773804 |
ctagaaatgagtgcattttcaacaatgtcatagcgggatgggttgagttagtggaggaggttaaagtgttgtcttggaggt |
42773724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 31524698 - 31524853
Alignment:
| Q |
2 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
101 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||| || | ||| |||| ||||||| | ||||||||| | || ||||| |||| |||||||| | |
|
|
| T |
31524698 |
ttccttcattgtgacttggcaaggaatatttggttaaagctaatggagtggctagattttagctttgtaatgcctccaaatttgtttatccattgggagt |
31524797 |
T |
|
| Q |
102 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgg |
158 |
Q |
| |
|
|||||||| || ||| || || ||||||||||||||||| ||| | ||||||||| |
|
|
| T |
31524798 |
gttggagt-ggtggaacttcgaataagaaaattcggaagggcttgagaatgatatgg |
31524853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 344
Target Start/End: Original strand, 27220356 - 27220574
Alignment:
| Q |
126 |
aagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggt |
225 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| || |||||| | ||||||| ||| ||||||||||| ||||| ||| |||| || || || |
|
|
| T |
27220356 |
aagaaaatccggaagggtttgcgtatgatatgggaggcggcgatttggataatttggagagcaagaaatgaccgtattttcaatgatgagaacgcattgt |
27220455 |
T |
|
| Q |
226 |
gggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgcct |
325 |
Q |
| |
|
|||| ||||| ||||||||||| || ||| |||||||||| | ||| ||||| ||||| ||| |||| || ||| ||| |||||| |||| |||||| | |
|
|
| T |
27220456 |
gggacgagttagtggaggaggtgaaggtggtgtcttggagatggcttttaggaagatttaatattccagcatgtttgtattatgagtggacttggtgtcc |
27220555 |
T |
|
| Q |
326 |
ccgagattgtttgttgagg |
344 |
Q |
| |
|
||| || |||||| ||||| |
|
|
| T |
27220556 |
ccgggactgtttgatgagg |
27220574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 310
Target Start/End: Complemental strand, 32699697 - 32699516
Alignment:
| Q |
129 |
aaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggtggg |
228 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||| | || |||||||| ||||||| || ||||| | | |||||||||||||| ||| | ||||||| |
|
|
| T |
32699697 |
aaaatccggaagggatcgcgtatgattcgggagcttgtgatttgggtaatttggaaggcaagaaacgggtgcatttttaataatgagaatacaaggtggg |
32699598 |
T |
|
| Q |
229 |
atgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatga |
310 |
Q |
| |
|
|||| || |||||||||| || ||| ||||||| |||| | | ||||| |||||||| ||||||| |||||||| ||||| |
|
|
| T |
32699597 |
atgacttaatggaggaggttaaggtgatgtcttgtaggtggttgttaggaagattcaacattccggcatgtatgttgtatga |
32699516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 5201389 - 5201145
Alignment:
| Q |
2 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
101 |
Q |
| |
|
||||| ||||| || |||||||| ||| ||||| | || ||||| ||||||| |||||||||||||||||| |||| || ||| | | |||||||||| |
|
|
| T |
5201389 |
ttcctccattgcgatatggctagaaatatttggcttaacttgatggtgtggttggatttgaattttgtaatgccacccaacttattcgtccattgggaat |
5201290 |
T |
|
| Q |
102 |
gtt-ggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgg |
200 |
Q |
| |
|
||| || | |||| | |||||| |||||||| || ||||| ||| | ||||| ||| | | | ||||||||| ||||||| |||||||||| |
|
|
| T |
5201289 |
gttgggcgatgggtaa--tattaataagaaaatccgtaagggtttgagaatgatttggcaagccgcaatttgggtcatttggaaggcgagaaatgggttt |
5201192 |
T |
|
| Q |
201 |
atttttaataatgaaaatgcgaggtgggatgagttggtggaggaggt |
247 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||| ||||||||||| |
|
|
| T |
5201191 |
atttttaataatgttattgcaaggtgggatgagttagtggaggaggt |
5201145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1160455 - 1160666
Alignment:
| Q |
1 |
cttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaa |
100 |
Q |
| |
|
||||||||||| |||| | || |||||||||||||||||| ||||| ||||| | ||||||| ||||||||| | || ||||| |||||||||||||| |
|
|
| T |
1160455 |
cttccttcattttgactttgcaaggaatgtttggttgaatttgatgatgtggcttaatttgaactttgtaatgccgccaaatttgtttattcattgggaa |
1160554 |
T |
|
| Q |
101 |
tgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgg |
200 |
Q |
| |
|
|||||||| |||||| | | || || || | ||||| || |||||| |||| ||||||| || |||||||||| | |||| ||||||||| |||||| |
|
|
| T |
1160555 |
tgttggagcgggggga-atttgaataaaaaggtgcggaaaggtttgcgtttgatttgggaggcgggaatttgggtgttatggaaagcgagaaacgaccgg |
1160653 |
T |
|
| Q |
201 |
atttttaataatg |
213 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
1160654 |
atcttcaataatg |
1160666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 2688525 - 2688189
Alignment:
| Q |
8 |
cattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttgga |
107 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| | ||||| ||||| |||||| ||||| ||||| | || || ||| | || |||||||| ||||||| |
|
|
| T |
2688525 |
cattgtgatttggctcggaatgtttggttgacttcgatgtcttggttggatttgcattttataatgcccccaaacttattcatccattgggagtgttgga |
2688426 |
T |
|
| Q |
108 |
gttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggattttta |
207 |
Q |
| |
|
|| ||||| | | || |||||||| ||||| || ||||| ||||| ||||||| || ||||||| |||||| || |||||||| | ||||||| |
|
|
| T |
2688425 |
gt--ggggaccactaaataagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctagaaatgattgcattttta |
2688328 |
T |
|
| Q |
208 |
ataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgtttta |
307 |
Q |
| |
|
|||||| ||||| |||||||| ||| | ||||||||||| |||||| || | ||||||| | | ||| || ||| ||| |||||| ||| ||| ||| |
|
|
| T |
2688327 |
ataatgttaatgctaggtgggaggaggtagtggaggaggttaaagtgttgacgtggaggtggatgttaagtcgatcgaatactccggcatgtttgtatta |
2688228 |
T |
|
| Q |
308 |
tgaatggagttggtgcctccgagattgtttgttgaggtaa |
347 |
Q |
| |
|
||| ||||||||||||| |||||| ||| | ||||||||| |
|
|
| T |
2688227 |
tgagtggagttggtgcc-ccgagagtgtctcttgaggtaa |
2688189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 36517534 - 36517643
Alignment:
| Q |
237 |
gtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgcctccgagattgtt |
336 |
Q |
| |
|
||||||||||| ||||| |||||||||||| | | ||||| ||||| ||||| ||||| ||||||| |||||| ||| |||||||| ||| || |||| |
|
|
| T |
36517534 |
gtggaggaggtgaaagttttgtcttggaggtgggtgttagggagatttaatgtcccggcatgtatgtattatgagtggtgttggtgctcccgtgagtgtt |
36517633 |
T |
|
| Q |
337 |
tgttgaggta |
346 |
Q |
| |
|
|||||||||| |
|
|
| T |
36517634 |
tgttgaggta |
36517643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 11239475 - 11239351
Alignment:
| Q |
224 |
gtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgc |
323 |
Q |
| |
|
|||||||||||| ||||||||||| || || |||||||||||| | | ||||| ||||| ||||| ||||| || |||| ||| || ||| ||||||| |
|
|
| T |
11239475 |
gtgggatgagttagtggaggaggtgaaggttttgtcttggaggtgggtgttaggaagatttaatgtgccggcttgcatgtattacgagtggtgttggtgt |
11239376 |
T |
|
| Q |
324 |
ctccgagattgtttgttgaggtaag |
348 |
Q |
| |
|
| | | || ||||||||||| |||| |
|
|
| T |
11239375 |
ccctgcgagtgtttgttgagataag |
11239351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 10430270 - 10430418
Alignment:
| Q |
5 |
cttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgtt |
104 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| | ||| |||||| || ||||| ||| | ||| | || ||||| |||||||||||||||||| |
|
|
| T |
10430270 |
cttcattgcgatttggctaggagtgtttggttgaagcttatggggtggttggacttgaactttatcatgcccccaaatttgtttattcattgggaatgtt |
10430369 |
T |
|
| Q |
105 |
ggagttgggggatctattaacaagaaaattcggaagggattgcgtatgat |
154 |
Q |
| |
|
|||| || ||| || |||||||||||| |||| || ||||||||||| |
|
|
| T |
10430370 |
ggag-tgccggagtcatgaacaagaaaattaggaaaggtttgcgtatgat |
10430418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 9850777 - 9850737
Alignment:
| Q |
75 |
caccgaatttaattattcattgggaatgttggagttggggg |
115 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
9850777 |
caccaaatttatttattcattgggaatgttggagtgggggg |
9850737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 14459327 - 14459568
Alignment:
| Q |
5 |
cttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgtt |
104 |
Q |
| |
|
|||||||| ||| |||| | |||||| ||||| || ||||| |||||||||||||||||||| ||| | |||||||| |||| ||||||||||||| |
|
|
| T |
14459327 |
cttcattgcgacttggcaaagaatgtgtggttacatttgatgacttggttagatttgaattttgttatgccgccgaatttgtttatccattgggaatgtt |
14459426 |
T |
|
| Q |
105 |
ggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggattt |
204 |
Q |
| |
|
|||| ||||||| ||| | ||||| ||||||||||| ||||| |||||||||||||| | ||||||| |||||| || || ||||| | |||| |
|
|
| T |
14459427 |
ggag-caggggatcaattcataagaagattcggaagggcttgcggatgatatgggaggtagcggtttgggtaatttggcgcgctaggaatgagggcattt |
14459525 |
T |
|
| Q |
205 |
ttaataatgaaaatgcgaggtgggatgagttggtggaggaggt |
247 |
Q |
| |
|
||||||||| | ||| |||||||||||| | || |||||||| |
|
|
| T |
14459526 |
ttaataatgggattgctaggtgggatgagcttgttgaggaggt |
14459568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 20794299 - 20794561
Alignment:
| Q |
1 |
cttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaa |
100 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| | |||||| ||||| |||||||||||| ||||| | |||| | |||| |||||||| |
|
|
| T |
20794299 |
cttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttggttggatttgaattttataatgccttcgaacctttttatccattgggag |
20794398 |
T |
|
| Q |
101 |
tgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgg |
200 |
Q |
| |
|
||||||||| ||||| || || | |||||| ||||||| | ||||| ||||| ||| |||| | |||||||||||||||| || |||||||| | |
|
|
| T |
20794399 |
tgttggagt-gggggtccttttcataagaaagttcggaacgagttgcggatgatttgg-aggtcgggatttgggtgatttggaaggctagaaatgagtgc |
20794496 |
T |
|
| Q |
201 |
atttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggag |
265 |
Q |
| |
|
| ||||||||||| | ||| || | ||||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
20794497 |
aattttaataatgctattgctagataggatgagttagtggaggaggttaaagtgatgtcttggag |
20794561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 307
Target Start/End: Complemental strand, 2031052 - 2030796
Alignment:
| Q |
49 |
gtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcg |
148 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||| |||| |||||||| |||||| | ||||| || |||| ||||| || |||||||| ||| | |
|
|
| T |
2031052 |
gtggttggatttgaattttgtaatgccacccaatttatttatccattgggagtgttgg-gcggggggtgctcttaataagaagatccggaagggtttgag |
2030954 |
T |
|
| Q |
149 |
tatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggta |
248 |
Q |
| |
|
||||| ||| | || | |||||||||||||||| ||||||||| ||||| ||||| | | || ||||||||||| || |||||||||||| |
|
|
| T |
2030953 |
aatgatttggcaagttgctatttgggtgatttggaaggcgagaaatagggttattttcaataa-gttattgtaaggtgggatgaattagtggaggaggta |
2030855 |
T |
|
| Q |
249 |
aaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgtttta |
307 |
Q |
| |
|
|| ||| | || ||||| | | | ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2030854 |
aaggtgttatcgtggagatggttgttaggtagatttaatgctccggcgtgtatgtttta |
2030796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 38784786 - 38784946
Alignment:
| Q |
2 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
101 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| | ||| ||||| ||||||||||| ||| | ||| | || ||||| |||||||| || ||| |
|
|
| T |
38784786 |
ttcctacattgtgacttggcgaggaatgtttggcttaatttgatgactaggttagatttggtgtttattatgcctcctaatttgtttattcatcggaaat |
38784885 |
T |
|
| Q |
102 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggt |
163 |
Q |
| |
|
|||||||| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38784886 |
gttggagt-gggggatttttcaacaagaaaattcggaaaggattgcgtatgatatgggaggt |
38784946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 4636944 - 4636777
Alignment:
| Q |
46 |
gttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttggagttgggggatctatta-acaagaaaattcggaagggat |
144 |
Q |
| |
|
||||||| | |||||||||||||||||| | || ||||| ||||||||||||| ||||||||| ||||| | |||| | ||||| ||||| ||| || |
|
|
| T |
4636944 |
gttgtggctcgatttgaattttgtaatgccgcctaatttgtttattcattgggagtgttggagtgggggg--ccattacataagaagattcgaaagctat |
4636847 |
T |
|
| Q |
145 |
tgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatga |
214 |
Q |
| |
|
|| | ||||| |||||||||||||||||||| | |||| ||| ||||||| || ||||| |||||||| |
|
|
| T |
4636846 |
tgaggatgatttgggaggtggtaatttgggttttgtggaaagctagaaatgggcgtattttcaataatga |
4636777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 36251076 - 36251155
Alignment:
| Q |
5 |
cttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaattt |
84 |
Q |
| |
|
|||| |||||| ||||| | |||| ||||||| || | |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
36251076 |
cttccttgtgatatggcgaagaatatttggttaaacttaatgttgtggttagatttgaattttgtaatgccaccaaattt |
36251155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 263
Target Start/End: Complemental strand, 55855020 - 55854883
Alignment:
| Q |
126 |
aagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggt |
225 |
Q |
| |
|
|||||| | |||| ||| ||||||||||| |||||||| || |||| ||| ||||||| ||| ||||||| | | ||||||| |||| |||| |||| |
|
|
| T |
55855020 |
aagaaagtgcggacggggttgcgtatgatttgggaggtagtgattttggttatttggaaagcaagaaatgccagtgtttttaacaatgtgaatgataggt |
55854921 |
T |
|
| Q |
226 |
gggatgagttggtggaggaggtaaaagtgctgtcttgg |
263 |
Q |
| |
|
|||||||| | |||||||||| |||||| |||||||| |
|
|
| T |
55854920 |
gggatgagcttatggaggaggtgaaagtgatgtcttgg |
55854883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 345
Target Start/End: Complemental strand, 7115160 - 7114944
Alignment:
| Q |
129 |
aaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggtggg |
228 |
Q |
| |
|
||||| ||||||||| || | |||| |||||||| || |||||||| ||||||| |||||||||| | ||||| || ||||| | || ||||||| |
|
|
| T |
7115160 |
aaaatccggaagggaatgaggttgatttgggaggttgtgatttgggttatttggagggcgagaaatggttgtattttcaacaatgagatagctaggtggg |
7115061 |
T |
|
| Q |
229 |
atgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgcctccg |
328 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||||||| | | ||||| ||||| ||| | ||||| || ||||| || || ||| ||||||| | || |
|
|
| T |
7115060 |
atgagttagtggaggaggtcaaggttatgtcgtggaggtggttattagggagatttaatatcccggcttgcatgttctacgagtggtgttggtgtcctcg |
7114961 |
T |
|
| Q |
329 |
agattgtttgttgaggt |
345 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
7114960 |
ggattgtttgatgaggt |
7114944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 38092991 - 38092895
Alignment:
| Q |
224 |
gtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttgg |
320 |
Q |
| |
|
|||||||||||| ||||||||||| || || | || |||| || | | ||||| ||||| ||| || |||| |||||||||||||||||| ||||| |
|
|
| T |
38092991 |
gtgggatgagttagtggaggaggttaaggttatatcatggaagtggttattagggagatttaatatttcggcatgtatgttttatgaatggtgttgg |
38092895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 52867174 - 52867217
Alignment:
| Q |
168 |
atttgggtgatttggacagcgagaaatgaccggatttttaataa |
211 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52867174 |
atttggattatttggaaagcgagaaatgaccggatttttaataa |
52867217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 21977363 - 21977441
Alignment:
| Q |
135 |
cggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatg |
213 |
Q |
| |
|
||||| || ||||||||||| |||||||| | || ||||||||||||| || ||| ||||| || ||||||||||||| |
|
|
| T |
21977363 |
cggaaaggtttgcgtatgatttgggaggttgccatatgggtgatttggaaagtgaggaatgaacgcatttttaataatg |
21977441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 43156 - 43252
Alignment:
| Q |
224 |
gtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttgg |
320 |
Q |
| |
|
|||||||||||| ||||| ||||| || || |||||| || || | | ||||| ||||| ||| | ||||| |||||||||||||||||| ||||| |
|
|
| T |
43156 |
gtgggatgagttagtggatgaggttaaggttatgtctttgaagtggttattagggagatttaatatgccggcatgtatgttttatgaatggtgttgg |
43252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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