View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_high_8 (Length: 335)
Name: NF8563_high_8
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 3883032 - 3882713
Alignment:
| Q |
1 |
ataataattttctaaaacaataatgatagccaatgacaattgtaaattgtaatgcagtaaaaacatttccagcgatacaatcttaacacattctttccaa |
100 |
Q |
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| T |
3883032 |
ataataattttctaaaacaataatgatagtcaatgacaattgtaaattgtaatgcagtaaaaacatttccagcgatacaatcttaacacattctttccaa |
3882933 |
T |
|
| Q |
101 |
cacccacatacaggttgagtcttaacacattctagcaatacaatcttaacacattctttacacacttgttgagtctcaatctctattgggttggaactgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882932 |
cacccacatacaggttgagtcttaacacattctagcaatacaatcttaacacattctttacacacttgttgagtctcaatctctattgggttggaactgg |
3882833 |
T |
|
| Q |
201 |
gaaccatttcctacgtggtaggactcatgaatttcacccaataacaaagagcgtacaaaagaatgcgtctgatagtgtgttgctagaatttttcatgcag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882832 |
gaaccatttcctacgtggtaggactcatgaatttcactcaataacaaagagcgtacaaaagaatgcgtctgatagtgtgttgctagaatttttcatgcag |
3882733 |
T |
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| Q |
301 |
aaaatatgaaaaaacatatt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
3882732 |
aaaatatgaaaaaacatatt |
3882713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 3869337 - 3869296
Alignment:
| Q |
172 |
agtctcaatctctattgggttggaactgggaaccatttccta |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3869337 |
agtctcaatctctattaggttggaactgggaaccatttccta |
3869296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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