View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8563_low_12 (Length: 335)

Name: NF8563_low_12
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8563_low_12
NF8563_low_12
[»] chr8 (3 HSPs)
chr8 (1-323)||(31408974-31409302)
chr8 (70-122)||(11637898-11637950)
chr8 (70-122)||(32855556-32855608)
[»] chr1 (3 HSPs)
chr1 (22-225)||(7268560-7268761)
chr1 (26-103)||(45265286-45265363)
chr1 (70-194)||(30385242-30385366)
[»] chr6 (6 HSPs)
chr6 (58-206)||(10599608-10599756)
chr6 (20-122)||(26567189-26567290)
chr6 (22-126)||(31869848-31869952)
chr6 (70-127)||(3623807-3623864)
chr6 (22-103)||(7831351-7831432)
chr6 (48-117)||(33821418-33821487)
[»] chr4 (5 HSPs)
chr4 (17-127)||(10550534-10550644)
chr4 (71-122)||(11794624-11794675)
chr4 (70-117)||(29585939-29585986)
chr4 (45-103)||(42154951-42155009)
chr4 (70-122)||(50205859-50205911)
[»] chr3 (5 HSPs)
chr3 (89-182)||(19901640-19901736)
chr3 (22-103)||(21370221-21370301)
chr3 (53-103)||(42225329-42225379)
chr3 (1-67)||(54743908-54743974)
chr3 (90-126)||(42049867-42049903)
[»] chr2 (2 HSPs)
chr2 (25-122)||(13533036-13533133)
chr2 (18-127)||(2183002-2183111)
[»] chr5 (1 HSPs)
chr5 (60-126)||(3050867-3050933)
[»] chr7 (2 HSPs)
chr7 (26-103)||(33010331-33010408)
chr7 (58-123)||(43213678-43213743)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 31409302 - 31408974
Alignment:
Q  1 gtcacggtttaacctttacatatgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31409302 gtcacggtttaacatttacatatgtcaatgcacaactttgattattgatatgtttagatatttattagcaaaaattataaatagttggtattttaaaaat 31409203  T
Q  101 atttgttgagataaatcg---aacatcttatttacaactatttctctttatgtattagtaaaacaatatagtccaagtagattatgtgaataatgcatat 197  Q
    ||| ||||||||||||||   ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  31409202 attcgttgagataaatcgaacaacatcttattcacaattatttctctttatgtattagtaaaacaatatagtccaaatagattatgtgaataatgaatat 31409103  T
Q  198 gatcaaactatgacaattattttaagattgaaggggtaataaattgttttaa-ttttagagcaaatacatttgacttttgttataa--agagagcataaa 294  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  31409102 gatcaaactgtgacaattattttaaaattgaaggggtaataaattgttttaacttttagagcaaatacatttgacttttgttataaagagagagcataaa 31409003  T
Q  295 tttgaattttatcatgtattgtatttcat 323  Q
    | |||||||| ||||||||||||||||||    
T  31409002 tatgaattttttcatgtattgtatttcat 31408974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 11637950 - 11637898
Alignment:
Q  70 aaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaaca 122  Q
    |||||||||||| | ||  |||||||||||||||||| |||||||||| ||||    
T  11637950 aaaaattataaaaatttaatattttaaaaatatttgtcgagataaatcaaaca 11637898  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 32855556 - 32855608
Alignment:
Q  70 aaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaaca 122  Q
    |||||||||||| | ||| |||||||||||||||| |||||| ||||| ||||    
T  32855556 aaaaattataaaaatttgatattttaaaaatatttattgagacaaatcaaaca 32855608  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 7268761 - 7268560
Alignment:
Q  22 atgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtatttta-aaaatatttgttgagataaatcgaa 120  Q
    ||||||||||||||||||||  ||| |||| |||  |||| ||||||||||||||||||| ||||| ||||||| ||||||||  |||||| ||||||||    
T  7268761 atgtcaatgcacaactttgaccattaatatctttcattatatattagcaaaaattataaaaagttgatattttaaaaaatattcattgagacaaatcgaa 7268662  T
Q  121 catcttatttacaactatttctctttatgtattagtaaaacaatatagtccaagtagattatgtgaataatgcatatgatcaaactatgacaattatttt 220  Q
    ||| ||||| ||||  |||| |||||||    ||||| || ||||| ||| ||  |||||||||||||| |||| | | ||||| | |||||||||||||    
T  7268661 cattttattcacaaacatttgtctttat---atagtacaaaaatatggtcaaacgagattatgtgaatagtgcacacggtcaaattgtgacaattatttt 7268565  T
Q  221 aagat 225  Q
     ||||    
T  7268564 gagat 7268560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 45265363 - 45265286
Alignment:
Q  26 caatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatt 103  Q
    ||||| ||| |||||||  || |||| |||| |||| ||||||||||||||||||| | ||| |||||| ||||||||    
T  45265363 caatgaacatctttgatctttaatatctttaattatgtattagcaaaaattataaaaatttgatattttgaaaatatt 45265286  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 30385242 - 30385366
Alignment:
Q  70 aaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaacatcttatttacaactatttctctttatgtattagtaaaacaatatagt 169  Q
    ||||||||||||   ||| |||||| ||||||||||| |||| ||||  |||||||||  ||| |  |||| | ||||| ||||||| ||| ||||| ||    
T  30385242 aaaaattataaaattttgatattttgaaaatatttgtcgagagaaattaaacatcttacatactaacatttgtatttatatattagttaaaaaatatggt 30385341  T
Q  170 ccaagtagattatgtgaataatgca 194  Q
    | ||||| | |||||||||| ||||    
T  30385342 caaagtaaactatgtgaatagtgca 30385366  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 10599756 - 10599608
Alignment:
Q  58 ttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaacatcttatttacaactatttctctttatgtattagta 157  Q
    |||| |||||| | |||||||||| | ||| |||||| ||||||||| ||||||||||||||||||||||| ||| |  || | ||||||| ||||||      
T  10599756 ttatctattagtagaaattataaaaaattgatattttgaaaatatttattgagataaatcgaacatcttatatactaacatctatctttatttattagcc 10599657  T
Q  158 aaacaatatagtccaagtagattatgtgaataatgcatatgatcaaact 206  Q
     || |||||  || ||  |||||||||||||| ||||||||||||||||    
T  10599656 taaaaatatgatcgaaaaagattatgtgaatattgcatatgatcaaact 10599608  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 26567189 - 26567290
Alignment:
Q  20 atatgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatcga 119  Q
    ||||||||||  ||||||||| | |||||||| |||| |||| |||    |||||||||||  ||| | |||||||||||||||||||||||||||| ||    
T  26567189 atatgtcaatatacaactttg-tcattgatatctttaattatctatattaaaaaattataacaagtagatattttaaaaatatttgttgagataaattga 26567287  T
Q  120 aca 122  Q
    |||    
T  26567288 aca 26567290  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 31869952 - 31869848
Alignment:
Q  22 atgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaac 121  Q
    |||||||| ||||| ||||| |||| |||| |||| |||| ||| |  |||||||||||| | ||| |||||| ||||||||  |||||| ||||| |||    
T  31869952 atgtcaatacacaattttgactattaatatctttaattatatataataaaaaattataaaaatttgatattttgaaaatattcattgagacaaatcaaac 31869853  T
Q  122 atctt 126  Q
    |||||    
T  31869852 atctt 31869848  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 3623807 - 3623864
Alignment:
Q  70 aaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaacatctta 127  Q
    |||||||||||| | ||| |||||||||||||||  |||||| ||||| |||||||||    
T  3623807 aaaaattataaaaatttgatattttaaaaatattcattgagacaaatcaaacatctta 3623864  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 7831351 - 7831432
Alignment:
Q  22 atgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatt 103  Q
    ||||||||||||||||| || ||||  ||| ||||||||| | | |  ||||| |||||| ||||| |||||||||||||||    
T  7831351 atgtcaatgcacaacttagaatattactatctttagttatctgtaataaaaaagtataaaaagttgatattttaaaaatatt 7831432  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 33821487 - 33821418
Alignment:
Q  48 atatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatc 117  Q
    |||| |||| |||| ||||  ||||||||||||| | ||| |||||||||||||||| || |||||||||    
T  33821487 atatttttaattatgtattgacaaaaattataaaaatttgatattttaaaaatatttattaagataaatc 33821418  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 10550644 - 10550534
Alignment:
Q  17 tacatatgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaat 116  Q
    |||||||||||||  ||||||||||| ||| |||| |||| |||| ||| |  |||||||||||| | ||| |||||||||||||||  | |||| ||||    
T  10550644 tacatatgtcaatatacaactttgatcattaatatatttaattatatataataaaaaattataaaaatttgatattttaaaaatattcatcgagacaaat 10550545  T
Q  117 cgaacatctta 127  Q
    | |||||||||    
T  10550544 caaacatctta 10550534  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 11794624 - 11794675
Alignment:
Q  71 aaaattataaatagttggtattttaaaaatatttgttgagataaatcgaaca 122  Q
    ||||||||||| | ||| |||||||||||||||| |||||| ||||||||||    
T  11794624 aaaattataaaaatttgatattttaaaaatatttattgagacaaatcgaaca 11794675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 29585939 - 29585986
Alignment:
Q  70 aaaaattataaatagttggtattttaaaaatatttgttgagataaatc 117  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||||||    
T  29585939 aaaaattataaaaatttgatattttaaaaatatttattgagataaatc 29585986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 42155009 - 42154951
Alignment:
Q  45 ttgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatt 103  Q
    ||||||| |||| |||  ||| ||||||||||||||| ||||| |||||||||||||||    
T  42155009 ttgatatatttaattacatataagcaaaaattataaaaagttgatattttaaaaatatt 42154951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 50205911 - 50205859
Alignment:
Q  70 aaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaaca 122  Q
    |||||||||||| | ||  |||||||||||||||||| |||||||||| ||||    
T  50205911 aaaaattataaaaatttaatattttaaaaatatttgtcgagataaatcaaaca 50205859  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 19901640 - 19901736
Alignment:
Q  89 tattttaaaaatatttgttgagataaatcgaacatcttatttac---aactatttctctttatgtattagtaaaacaatatagtccaagtagattat 182  Q
    |||||||||||||||  |||| ||||||||||||| |||| |||    | ||||| ||||||| |||||||||||||||||  || |||||||||||    
T  19901640 tattttaaaaatattcattgatataaatcgaacattttatatactaataatatttgtctttatatattagtaaaacaatattatcaaagtagattat 19901736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 21370221 - 21370301
Alignment:
Q  22 atgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatt 103  Q
    ||||||||||||||||||||  | | |||| ||||||||| ||| | ||||||||||||| ||||| |||||| ||||||||    
T  21370221 atgtcaatgcacaactttgacaactaatatctttagttatctatcaccaaaaattataaa-agttgatattttgaaaatatt 21370301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 42225379 - 42225329
Alignment:
Q  53 tttagttatttattagcaaaaattataaatagttggtattttaaaaatatt 103  Q
    |||| |||| ||||||||||||||||||| | || ||||||||||||||||    
T  42225379 tttaattatatattagcaaaaattataaaaatttagtattttaaaaatatt 42225329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 54743974 - 54743908
Alignment:
Q  1 gtcacggtttaacctttacatatgtcaatgcacaactttgattattgatatgtttagttatttatta 67  Q
    ||||| ||||||| || | ||||| |||||||||||||||| |||| |||| ||||||||| |||||    
T  54743974 gtcaccgtttaactttcatatatgacaatgcacaactttgactatttatatctttagttatctatta 54743908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 42049903 - 42049867
Alignment:
Q  90 attttaaaaatatttgttgagataaatcgaacatctt 126  Q
    |||||||||||| || |||||||||||||||||||||    
T  42049903 attttaaaaatacttattgagataaatcgaacatctt 42049867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 13533036 - 13533133
Alignment:
Q  25 tcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaaca 122  Q
    |||||| |||| ||| | |||| ||||  ||||||||||||||  |||| || |||| | ||| ||||||||||||||| |||||||||||| |||||    
T  13533036 tcaatgtacaattttaactattaatattcttagttatttattaataaaagttgtaaaaaattgatattttaaaaatattcgttgagataaattgaaca 13533133  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 2183002 - 2183111
Alignment:
Q  18 acatatgtcaatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatc 117  Q
    ||||||| |||||||||| ||||| | || |||| |||| |||| ||  |  |||||||||||| | ||  |||||| ||||||||||| |||| |||||    
T  2183002 acatatgccaatgcacaattttgactgttaatatctttaattatctaaaataaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatc 2183101  T
Q  118 gaacatctta 127  Q
     |||||||||    
T  2183102 aaacatctta 2183111  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 3050867 - 3050933
Alignment:
Q  60 atttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaacatctt 126  Q
    ||||||||| ||||||||| || | ||| ||||| ||||||||| ||||||||||||| ||| ||||    
T  3050867 atttattagaaaaaattatgaaaatttgatatttgaaaaatattcgttgagataaatctaacttctt 3050933  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 33010408 - 33010331
Alignment:
Q  26 caatgcacaactttgattattgatatgtttagttatttattagcaaaaattataaatagttggtattttaaaaatatt 103  Q
    |||||||||| |||||   || |||| |||| |||| |||||| |||||||||||| ||||| |||||| ||||||||    
T  33010408 caatgcacaaatttgacctttaatatctttaattatctattagtaaaaattataaaaagttgatattttgaaaatatt 33010331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 43213743 - 43213678
Alignment:
Q  58 ttatttattagcaaaaattataaatagttggtattttaaaaatatttgttgagataaatcgaacat 123  Q
    |||| |||||| |||||| ||||| | ||| |||||||||||||||  || |||||||||||||||    
T  43213743 ttatctattaggaaaaataataaaaaattgatattttaaaaatattcattaagataaatcgaacat 43213678  T

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