View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_15 (Length: 310)
Name: NF8563_low_15
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 29973167 - 29973037
Alignment:
| Q |
19 |
gtaaaaccgtacttaagtagcaaggtaagggtgatagtggaaatttagggtaccattgttgtctttctaatatgaaaacaaatattccagcatatacata |
118 |
Q |
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| T |
29973167 |
gtaaaaccgtacttaagt--caaggtaagggtgataatggaaatttagggtaccattgttgtctttctaatatgaaaacaaatattccagcatatacata |
29973070 |
T |
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| Q |
119 |
tcgtatgtatgtcaaaattaagtacaatattca |
151 |
Q |
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| T |
29973069 |
tcgtatgtatgtcaaaattaagtacaatattca |
29973037 |
T |
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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 182 - 307
Target Start/End: Complemental strand, 29973006 - 29972879
Alignment:
| Q |
182 |
atgaataataatactaagtgttattagcttttcttatnnnnnnn-gaagaaggtgtaattagctgttaaatt-gttgataaggagttgatccaatgatct |
279 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29973006 |
atgaataataatactaagtgttattagcttttcttataaaaaaaagaagaaggtgtaattagctgttaaatttgttgataaggagttgatccaatgatct |
29972907 |
T |
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| Q |
280 |
cattatcctccaagctctctgcttctcc |
307 |
Q |
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| T |
29972906 |
cattatcctccaagctctatgtttctcc |
29972879 |
T |
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