View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8563_low_16 (Length: 297)
Name: NF8563_low_16
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 14734513 - 14734231
Alignment:
| Q |
7 |
gttcaggagtataactttactttgtatcacattcctgcttcaactacggctcccacgaaggtctcagaccaatccttggatattcttaaattcttcaatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14734513 |
gttcaggagtataactttactttgtatcacattcctacttcaactacggctcccacgaaggtctcagaccaatccctggatattcttaaattcttcaatt |
14734414 |
T |
|
| Q |
107 |
ttccacatacgaaatactgtccaacaatatatacaacaatgttggggtattctaatttgatcctaacatttctttgtgtccccggaggaatccaacttaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14734413 |
ttccacatacgaaatactgtccaacaatatatacaacaatgttggggtattctaatttgatcctaacatttctctgtgtccccggaggaatccaacttaa |
14734314 |
T |
|
| Q |
207 |
acttctcagttcaccagccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctc |
289 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14734313 |
acttctcagttcaccggccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctc |
14734231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 15595133 - 15594982
Alignment:
| Q |
6 |
cgttcaggagtataactttactttgtatcacattcctgctt--caactacggctcccacgaaggtctcagaccaatccttggatattcttaaattcttca |
103 |
Q |
| |
|
||||||||||||||||||| || | ||||||| |||||||| ||||||||||| | | | ||| ||||| ||||||||||||| |||| ||| |||| |
|
|
| T |
15595133 |
cgttcaggagtataacttttctctatatcacactcctgcttttcaactacggcttctagtacggtgtcagatcaatccttggatactcttgaatctttca |
15595034 |
T |
|
| Q |
104 |
attttccacatacgaaatactgtccaacaatatatacaacaatgttggggta |
155 |
Q |
| |
|
||||||||||||||| |||| | ||||||| | | ||||| | |||||||| |
|
|
| T |
15595033 |
cttttccacatacgaagtactattcaacaatgtgtccaacactattggggta |
15594982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University