View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_18 (Length: 254)
Name: NF8563_low_18
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 279699 - 279546
Alignment:
| Q |
51 |
agagagatattgtgttttccatgtggattgaaatcatttgagagaatttatttttctatcacaaaccatcaagctagcataagctgttaaaaataccttt |
150 |
Q |
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| T |
279699 |
agagagatagtgtgttttacacgagtgttgaaatcatttcagagaaattctttttctatca--aaccatcaagctagcataagctattaaaaatactttt |
279602 |
T |
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| Q |
151 |
agttcacttgagaacagagcaataaaggttgctgaaagtatgaaaagttattcata |
206 |
Q |
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| T |
279601 |
agttcacttgagaacaaagcaaaaaaggttgcagaaagtatgaaaagttattcata |
279546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 636153 - 636306
Alignment:
| Q |
51 |
agagagatattgtgttttccatgtggattgaaatcatttgagagaatttatttttctatcacaaaccatcaagctagcataagctgttaaaaataccttt |
150 |
Q |
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| T |
636153 |
agagagatagtgtgttttacacgagtgttgaaatcatttcagagaaattctttttctatca--aaccatcaagctagcataagctattaaaaatactttt |
636250 |
T |
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| Q |
151 |
agttcacttgagaacagagcaataaaggttgctgaaagtatgaaaagttattcata |
206 |
Q |
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| T |
636251 |
agttcacttgagaacaaagcaaaaaaggttgcagaaagtatgaaaagttattcata |
636306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 821956 - 822109
Alignment:
| Q |
51 |
agagagatattgtgttttccatgtggattgaaatcatttgagagaatttatttttctatcacaaaccatcaagctagcataagctgttaaaaataccttt |
150 |
Q |
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| T |
821956 |
agagagatagtgtgttttacacgagtgttgaaatcatttcagagaaattctttttctatca--aaccatcaagctagcataagctattaaaaatactttt |
822053 |
T |
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| Q |
151 |
agttcacttgagaacagagcaataaaggttgctgaaagtatgaaaagttattcata |
206 |
Q |
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| T |
822054 |
agttcacttgagaacaaagcaaaaaaggttgcagaaagtatgaaaagttattcata |
822109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 24787572 - 24787502
Alignment:
| Q |
135 |
tgttaaaaatacctttagttcacttgagaacagagcaataaaggttgctgaaagtatgaaaagttattcat |
205 |
Q |
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| T |
24787572 |
tgttaaaaatactttcagatcacttgagaacagagcaataaaggttgctgcaagtattaaaatttattcat |
24787502 |
T |
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