View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_2 (Length: 589)
Name: NF8563_low_2
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 18110077 - 18110415
Alignment:
| Q |
20 |
gatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaagacacaaccaatgaccaaatagatgaaaagtctc |
119 |
Q |
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| T |
18110077 |
gatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaagacacaaccaatgaccaaatagatgaaaagtctc |
18110176 |
T |
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| Q |
120 |
aaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatgaaaagcctcaaaatggtcaacaagtgttggagtc |
219 |
Q |
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| T |
18110177 |
aaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatgaaaagcctcaaaatggtcaacaagtgttggagtc |
18110276 |
T |
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| Q |
220 |
aaaaccaacatctatagagagaaccaaaacacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttacc |
319 |
Q |
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| T |
18110277 |
aaaaccaacatctatagagagaaccaaagcacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttacc |
18110376 |
T |
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| Q |
320 |
aaagaaaatttagaggaaaagatagtaggaatgagtgct |
358 |
Q |
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| T |
18110377 |
aaagaaaatttagaggaaaagatagtaggaatgagtgct |
18110415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 420 - 582
Target Start/End: Original strand, 18110477 - 18110639
Alignment:
| Q |
420 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
519 |
Q |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
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| Q |
520 |
cagaattcctccaaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctca |
582 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctca |
18110639 |
T |
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