View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_20 (Length: 251)
Name: NF8563_low_20
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 10589090 - 10589327
Alignment:
| Q |
14 |
cacacacgctcttcttattgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10589090 |
cacacacgctcttcttattgataagatttatatcacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaa |
10589189 |
T |
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| Q |
114 |
agattgcagtttcgattttcgggccttctctactcttttatgtgacaacttcatatatctcatgcttctttaggagatttttcattttatacttttgcaa |
213 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10589190 |
agattgcagtttcgatttatgggtcttctatactcttttatgtgacaagttcatatatctcatgcttctttaggagatttttcattttatacttttgcaa |
10589289 |
T |
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| Q |
214 |
gaatttagtactctattccttgatgaattcttgatagt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
10589290 |
gaatttagtactctattccttgatgaattcttgatagt |
10589327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 29303703 - 29303568
Alignment:
| Q |
31 |
ttgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaaagattgcagtttcgatt |
130 |
Q |
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|||| ||||||||||||||||| ||||||||| || | | ||| ||||| | ||||| || || ||||||| ||||| || ||| ||||| || |||| |
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| T |
29303703 |
ttgacaagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatt |
29303604 |
T |
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| Q |
131 |
ttcgggccttctctactcttttatgtgacaacttca |
166 |
Q |
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| T |
29303603 |
tctgagctttctctactcctttatgtgacaacttca |
29303568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 12529339 - 12529474
Alignment:
| Q |
31 |
ttgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaaagattgcagtttcgatt |
130 |
Q |
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| T |
12529339 |
ttgacaagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatt |
12529438 |
T |
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| Q |
131 |
ttcgggccttctctactcttttatgtgacaacttca |
166 |
Q |
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| T |
12529439 |
tctgagctttctctactcctttatgtgacaacttca |
12529474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 35841683 - 35841548
Alignment:
| Q |
31 |
ttgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaaagattgcagtttcgatt |
130 |
Q |
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|||| ||||||||||||||||| ||||||||| || | | ||| ||||| | ||||| || || ||||||| ||||| || ||| ||||| || |||| |
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| T |
35841683 |
ttgacaagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatt |
35841584 |
T |
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| Q |
131 |
ttcgggccttctctactcttttatgtgacaacttca |
166 |
Q |
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| | || |||||||||| ||||||||||||||||| |
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| T |
35841583 |
tctgagctttctctactcctttatgtgacaacttca |
35841548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 27730552 - 27730687
Alignment:
| Q |
31 |
ttgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaaagattgcagtttcgatt |
130 |
Q |
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|||| ||||||||||||||||| ||||||||| || | | ||| ||||| | ||||| || || ||||||| ||||| || ||| ||||| || |||| |
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| T |
27730552 |
ttgacaagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatt |
27730651 |
T |
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| Q |
131 |
ttcgggccttctctactcttttatgtgacaacttca |
166 |
Q |
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| T |
27730652 |
tctgagctttctctactcctttatgtgacaacttca |
27730687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 45965970 - 45965835
Alignment:
| Q |
31 |
ttgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaaagattgcagtttcgatt |
130 |
Q |
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|||| ||||||||||||||||| ||||||||| || | | ||| ||||| | ||||| || || ||||||| ||||| || ||| ||||| || |||| |
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| T |
45965970 |
ttgacaagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatt |
45965871 |
T |
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| Q |
131 |
ttcgggccttctctactcttttatgtgacaacttca |
166 |
Q |
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| | || |||||||||| ||||||||||||||||| |
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| T |
45965870 |
tctgagctttctctactcctttatgtgacaacttca |
45965835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 29282593 - 29282728
Alignment:
| Q |
31 |
ttgataagatttataacacgagaaaaatattgttctaatatttttgaactagtcattttgtatctctcgtattatctacacaaagattgcagtttcgatt |
130 |
Q |
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|||| ||||||||||||||||| ||||||||| || | | ||| ||||| | ||||| || || ||||||| ||||| || ||| ||||| || |||| |
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| T |
29282593 |
ttgacaagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatt |
29282692 |
T |
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| Q |
131 |
ttcgggccttctctactcttttatgtgacaacttca |
166 |
Q |
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| | || |||||||||| ||||||||||||||||| |
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| T |
29282693 |
tctgagctttctctactcctttatgtgacaacttca |
29282728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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