View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_29 (Length: 211)
Name: NF8563_low_29
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 8525013 - 8524833
Alignment:
| Q |
19 |
tttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacat |
118 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8525013 |
tttccatcttgcttatattcaaaaactcaaccttgctaacaatgatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacat |
8524914 |
T |
|
| Q |
119 |
cttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
199 |
Q |
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||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8524913 |
cttgacttgtctcatagttaccttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
8524833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 42125558 - 42125378
Alignment:
| Q |
19 |
tttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacat |
118 |
Q |
| |
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|||| |||||| | || |||||| |||||| |||||||||||| |||||||| |||| |||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
42125558 |
tttcaatcttgttcatcttcaaacactcaacctttctaacaatgatttctcttactctcattttcattctaagtttggtgggtttatgagtcttgcacat |
42125459 |
T |
|
| Q |
119 |
cttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
42125458 |
cttgacttgtctcgtagtttctttaaaggtgaaattccaattcaaatctcacacctttccaaattacaatcacttcatctc |
42125378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 41711831 - 41712011
Alignment:
| Q |
19 |
tttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacat |
118 |
Q |
| |
|
||||||||||| | || | |||| |||||| |||||| ||||| |||||||| ||| |||||||||| ||||||||| ||||||||||||| ||||| |
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| T |
41711831 |
tttccatcttgttcatctccaaacactcaacctttcttacaatgatttctcttactcccattttcattctaagtttggtcggtttttgagtcttgcacat |
41711930 |
T |
|
| Q |
119 |
cttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
199 |
Q |
| |
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|||||| ||||| ||||| |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
41711931 |
cttgacatgtcttatagttactttgaaggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc |
41712011 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 42118918 - 42118787
Alignment:
| Q |
58 |
caataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcgtag-tttctttaaaggtgaaattcc |
156 |
Q |
| |
|
|||||||||||| | ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
42118918 |
caataatttctccgcttctcgttttcattctaagtttggtggttttttgagtcttacacatcttgacttgtctcatagttttctttaaaggtgaaattcc |
42118819 |
T |
|
| Q |
157 |
aactcaaatctcacacctttgcaaattacaat |
188 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| |
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|
| T |
42118818 |
aactcaaatctcacacttatccaaattacaat |
42118787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 42130764 - 42130603
Alignment:
| Q |
38 |
caaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcgtagtt |
137 |
Q |
| |
|
|||| |||||| |||||| ||||| |||||| || |||| ||||||||| |||||| |||| ||| |||||| |||||||||||||||||| |||| |
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| T |
42130764 |
caaacactcaacctttcttacaatgatttctttgactctcattttcattataagttttgtggatttcagagtcttacacatcttgacttgtctgatagta |
42130665 |
T |
|
| Q |
138 |
tctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
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|
| T |
42130664 |
acttagaaggtgaaattccaactcaaatctctcacctatccaaattacaatcacttcatctc |
42130603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 34230903 - 34231038
Alignment:
| Q |
63 |
atttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactca |
162 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||| ||||||| |||||||| ||||||||| | |||||||| ||| ||||||||| |||| |
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| T |
34230903 |
atttctctggctcccattttcattctaagtttggcgggtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctca |
34231002 |
T |
|
| Q |
163 |
aatctcacacctttgcaaattacaatcacttcatct |
198 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| |
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| T |
34231003 |
aatctcggacctttccaaattacaatcacttcatct |
34231038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 34238921 - 34239081
Alignment:
| Q |
38 |
caaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcgtagtt |
137 |
Q |
| |
|
|||| |||||| |||||||||||| ||||| ||| || |||||| |||| |||||||| ||||| |||||| |||||||||||||||||| || | |
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| T |
34238921 |
caaacactcaacctttctaacaatggtttctatggttcctattttgattctaagtttggcaggtttacgagtcttacacatcttgacttgtctaatactc |
34239020 |
T |
|
| Q |
138 |
tctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatct |
198 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
34239021 |
atgttggcggtgaaattccttctcaaatctcatacctttccaaattacaatcacttcatct |
34239081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25521067 - 25521246
Alignment:
| Q |
19 |
tttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacat |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| | ||||||||||||||| |||||| |||||| |
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|
| T |
25521067 |
tttccatcttgctcatattcaaaaactcaacctttcttacaatgatttcactggctcccattttcatgctaagtttggtgggtttcagagtcttacacat |
25521166 |
T |
|
| Q |
119 |
cttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatct |
198 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25521167 |
ctttacttgtctggtagtttctttaaaggtaaaattccaactcaaatctcacacctttccaaattacaatcacttcatct |
25521246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 12250379 - 12250199
Alignment:
| Q |
19 |
tttccatcttgcttatattcaaaaactcaatctttctaacaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacat |
118 |
Q |
| |
|
|||| |||||||| || | |||| |||||| |||||| |||| ||||||| ||| |||||||||| ||||||||||| || || | ||| |||||| |
|
|
| T |
12250379 |
tttcgatcttgctcatctccaaacactcaacctttcttccaatgatttctcaaactcccattttcattctaagtttggtggattctttaatcttacacat |
12250280 |
T |
|
| Q |
119 |
cttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
12250279 |
cttgacttgtctaatagtttctttaaaggtgaagttccaactcaaatctcacacctttccaaattagaatcacttcatctc |
12250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 11120294 - 11120152
Alignment:
| Q |
57 |
acaataatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattcc |
156 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||||||| |||||| ||||||||| |||||||| |||| | || | ||||||||||| |
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|
| T |
11120294 |
acaataatttctccggctctcgttttcattctaagtttggtgggtttcagagtcttacacatctttacttgtcttatagtaacatttatggtgaaattcc |
11120195 |
T |
|
| Q |
157 |
aactcaaatctcacacctttgcaaattacaatcacttcatctc |
199 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| ||| ||||| |
|
|
| T |
11120194 |
aactcaaatctcatatctttccaaattacaatccctttatctc |
11120152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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