View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_3 (Length: 576)
Name: NF8563_low_3
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 9795064 - 9794505
Alignment:
| Q |
1 |
attattcaagagatgaagacaaatggggtaaccccagatttagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatcctt |
100 |
Q |
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| T |
9795064 |
attattcaagagatgaagacaaatggggtaaccccagatttagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatcctt |
9794965 |
T |
|
| Q |
101 |
ccggacttatgccggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggg |
200 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794964 |
ccggacttgtgctggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggg |
9794865 |
T |
|
| Q |
201 |
gaagactagaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtagcaagggtt |
300 |
Q |
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| T |
9794864 |
gaagactagaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtgtcaagggtt |
9794765 |
T |
|
| Q |
301 |
ttgtttctgagtggtagatttggtaaagggaaagagatagtggatcaaatgattgaaaaaggtttggtaccaaaccataagttttattacagtttgattg |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794764 |
ttgtttttgagtggtagatttggtaaagggaaagagatagtggatcaaatgattgaaaaaggtttggtaccaaaccataagttttattacagtttgattg |
9794665 |
T |
|
| Q |
401 |
gtattctctatggggttgaaagggtaaatcatgctcttgatttgtttgagaaaatgaaaggaagctcagtgggaggttatggactggtttatgatgtgct |
500 |
Q |
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| T |
9794664 |
gtattctctgtggggttgaaagggtaaatcatgctcttgatttgtttgagaaaatgaaaggaagctcagtgggaggttatggaccggtttatgatgtgct |
9794565 |
T |
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| Q |
501 |
cattccaaagctttatagaggaggggattttgaaaagagaagagagctttgggatgaagg |
560 |
Q |
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| T |
9794564 |
cattccaaagctttgtagaggaggggattttgaaaagggaagagagctttgggatgaagg |
9794505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 45145971 - 45146530
Alignment:
| Q |
1 |
attattcaagagatgaagacaaatggggtaaccccagatttagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145971 |
attattcaagagatgaagacaaatggggtaaccccagatatagtttgctataatacattccttaggtgcctttgtgaaagaaatctcagaaataatcctt |
45146070 |
T |
|
| Q |
101 |
ccggacttatgccggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggg |
200 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146071 |
ccggacttgtgcaggaagctttgaatgtgatgatggagatgaggtcttataaggtttttccaacttcaatcagttacaacattttgctttcttgtttggg |
45146170 |
T |
|
| Q |
201 |
gaagactagaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtagcaagggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45146171 |
gaagactagaagagttaaggaatcttgtcaaatacttgaagcaatgaacaaatctggtgttgctccagattgggttagctattatctggtgacaagggtt |
45146270 |
T |
|
| Q |
301 |
ttgtttctgagtggtagatttggtaaagggaaagagatagtggatcaaatgattgaaaaaggtttggtaccaaaccataagttttattacagtttgattg |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146271 |
ttgtttatgagtggtagatttggtaaagggaaagagatagtggatcaaatgattgaaaaaggtttggtaccaaaccataagttttattacagtttgattg |
45146370 |
T |
|
| Q |
401 |
gtattctctatggggttgaaagggtaaatcatgctcttgatttgtttgagaaaatgaaaggaagctcagtgggaggttatggactggtttatgatgtgct |
500 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45146371 |
gtattctctgtggggttgaaagggtaaatcatgctcttgatttgtttgagaaaatgaaaggaagctcagtgggaggttatggaccggtttatgatgtgct |
45146470 |
T |
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| Q |
501 |
cattccaaagctttatagaggaggggattttgaaaagagaagagagctttgggatgaagg |
560 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
45146471 |
cattccaaagctttgtagaggagggaattttgaaaagggaagagagctttgggatgaagg |
45146530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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