View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_4 (Length: 493)
Name: NF8563_low_4
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 32385561 - 32385086
Alignment:
| Q |
1 |
gataatataaacaacactctttgttgaactatttcatttcatcaccatcatcttggagtaagaaactataattgcaaggaatatgatattaggaagnnnn |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32385561 |
gataatataaacgatactctttgttgaactatttcatttcatcatcatcgttttcgagtaagaaactataattgcaaggaatatgatattaggaagaaaa |
32385462 |
T |
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| Q |
101 |
nnn-tacaatttttggatgctagcacaataactaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttttgctagcacaataact |
199 |
Q |
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| T |
32385461 |
aaaatacaatttttggatgctagcacaataactaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttttgctagcacaataact |
32385362 |
T |
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| Q |
200 |
cgttcttctctactgatcattttgtactctctcgagtcgtacacatagaatcaacgaaacatttcatcacattcacatccggtattttcgcacttgtgaa |
299 |
Q |
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| T |
32385361 |
cgttcttctctactgatcattttgtactctctcgagtcgtacacatagaatcaacgaaacatttcatcacattcacatccggaatttttgcacttgtgaa |
32385262 |
T |
|
| Q |
300 |
aagaaaaaaccggac---attcttccatacaatcttcgtcttctacacattcaagatgtcctataatg-nnnnnnngagtaaaataatgttactgaaaac |
395 |
Q |
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| T |
32385261 |
cagaaaaaatcggacaagattcttccatacaatcttcgtcttctacacattcaagatgtcctataatgaaaaaagagagtaaaataatgttactgaaaac |
32385162 |
T |
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| Q |
396 |
atgataaaggagtgcgtacgaactatgaagtaaagaagaaaatttgagaataaggatcgaaagatggcttacctccaat |
474 |
Q |
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| T |
32385161 |
acgataaaggagtgcgtacgaactatgaagtaaagaagaaaatttgag---aaggataaaaagatggcttacctccaat |
32385086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 32393069 - 32392916
Alignment:
| Q |
30 |
tatttcatttcatcaccatcatcttggagtaagaaactataattgcaaggaatatgatattaggaagnnnnnnntacaatttttggatgctagcacaata |
129 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| |
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| T |
32393069 |
tatttcatttcttcaccatcatcttagagtaagaaactataattgcaaggaatatgatattaggacaaaaaaaatacaacttttggacgctaacacaata |
32392970 |
T |
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| Q |
130 |
actaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttt |
183 |
Q |
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| T |
32392969 |
actaagcaacatctcttgaaatatttcaatttaagacatattgaacggtacttt |
32392916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 445
Target Start/End: Complemental strand, 32392736 - 32392667
Alignment:
| Q |
376 |
aaaataatgttactgaaaacatgataaaggagtgcgtacgaactatgaagtaaagaagaaaatttgagaa |
445 |
Q |
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|||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
32392736 |
aaaataatgttactaaaaatatgataaaagagtgtgtacgaactatgaagtaaagaagataatttgagaa |
32392667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 1681470 - 1681533
Alignment:
| Q |
375 |
taaaataatgttactgaaaacatgataaaggagtgcgtacgaac-tatgaagtaaagaagaaaat |
438 |
Q |
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||||||||||||| | ||||||||||||| || || |||||||| ||||||| |||||||||||| |
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| T |
1681470 |
taaaataatgtta-tcaaaacatgataaaagattgtgtacgaacttatgaagcaaagaagaaaat |
1681533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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