View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_5 (Length: 409)
Name: NF8563_low_5
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 50 - 401
Target Start/End: Original strand, 12273676 - 12274032
Alignment:
| Q |
50 |
tgaataacttatgaaaacaacttatgacattgttcttttcgtcttattgtctaggataaccaatgaaaatagcgtatacaattgaattgactcgccgtga |
149 |
Q |
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| T |
12273676 |
tgaataacttatgaaaacaacttatgacattgttcttttcggcttattgtctaggataaccaatgaaaatagcatatacaattggattgactcgccgtga |
12273775 |
T |
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| Q |
150 |
ttccaaacatgcagctagctacgaaacacagacacgtttagattatgcatgttgttgcagtgtctgacgcaaaggacacgtgtcggacaagacagtctaa |
249 |
Q |
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| T |
12273776 |
ttccaaacatgcagctagctacgaagcacagacacgtttagactatgcatgttgttgcagtgtctgacgcaaaggatacgtgtcggacaagacagtctaa |
12273875 |
T |
|
| Q |
250 |
ataaaattgttttttaat-----------gtctttaaaccggtgtccaacacctatataacacttatatgtgtatgtggtgtgtcagttgagtaatgtaa |
338 |
Q |
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|||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||| | |
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| T |
12273876 |
ataaaattgttttttaatgtacttgggtggtctttaaacatgtgtctgacacctatataacactta------tatgtggtgtgtcggttgagtaatgtta |
12273969 |
T |
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| Q |
339 |
aagacaaaaaatagaggtgaaggtagttattgttattttgagttacctgtcccagttgatgtc |
401 |
Q |
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| T |
12273970 |
aagacaaaaaatagaggtgaaggtagttattgttattttgagttacctgtcccagttgatgtc |
12274032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 16451208 - 16451179
Alignment:
| Q |
55 |
aacttatgaaaacaacttatgacattgttc |
84 |
Q |
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| T |
16451208 |
aacttatgaaaacaacttatgacattgttc |
16451179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 85
Target Start/End: Original strand, 9559519 - 9559549
Alignment:
| Q |
55 |
aacttatgaaaacaacttatgacattgttct |
85 |
Q |
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| T |
9559519 |
aacttatgaaaacaacttatgacattgttct |
9559549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 32840966 - 32840995
Alignment:
| Q |
55 |
aacttatgaaaacaacttatgacattgttc |
84 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32840966 |
aacttatgaaaacaacttatgacattgttc |
32840995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 41535471 - 41535442
Alignment:
| Q |
55 |
aacttatgaaaacaacttatgacattgttc |
84 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41535471 |
aacttatgaaaacaacttatgacattgttc |
41535442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 37389273 - 37389244
Alignment:
| Q |
55 |
aacttatgaaaacaacttatgacattgttc |
84 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
37389273 |
aacttatgaaaacaacttatgacattgttc |
37389244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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