View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_6 (Length: 403)
Name: NF8563_low_6
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 87 - 394
Target Start/End: Complemental strand, 32986155 - 32985849
Alignment:
| Q |
87 |
catgcatggttataaggttaggacacaatttgagttatataaggttgnnnnnnntgaaattagagacacaatcttaataggcacgtgagcatcaatggca |
186 |
Q |
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| T |
32986155 |
catgcatggttataaggttaggacataatttgtgttatataaggttgaaaaaa-tggaactagagacacaatcttaataggcacgtgagcatcaatggca |
32986057 |
T |
|
| Q |
187 |
cgtgctaattattaagaagtttctaaaatggaaaacttaatttattgaccatgttgaaaagtttcaacgtccattgtatcgggatggtcaacgtggtggc |
286 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32986056 |
cgtgctaattattaagaagtttctaaattggaaaacttaatttattgaccatgttgaaaagtttcaacgtccattgtatcgggatggtcaacatggtggc |
32985957 |
T |
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| Q |
287 |
tttgacaagctttgaaattcaatttacatttctgacctctcattcaagtactgataaagtgtgtcttttccacgtcgttatcgttattattttggaattc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32985956 |
tttgacaagctttgaaattcaatttacatttctgacctctcattcaagtactgataaagtgtgtcttttccacgtcgttatcgttattattttggaattc |
32985857 |
T |
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| Q |
387 |
atctcact |
394 |
Q |
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|| ||||| |
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| T |
32985856 |
atttcact |
32985849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 32986222 - 32986194
Alignment:
| Q |
20 |
ccatgttcactcatggtacgtagcttaaa |
48 |
Q |
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| T |
32986222 |
ccatgttcactcatggtacgtagcttaaa |
32986194 |
T |
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