View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8563_low_7 (Length: 402)
Name: NF8563_low_7
Description: NF8563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8563_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 37749414 - 37749026
Alignment:
| Q |
1 |
aagttcctatcgttattatccatatatgtcctatttgcttaagacaagacactgctatcttacaattggaactagtctaaattttctccaatgatttcat |
100 |
Q |
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| T |
37749414 |
aagttcctatcgttattatccatatatgtcctatttgcttaagacaagacactgctatcttacaattggaactagtctaaattttctccaatgatttcat |
37749315 |
T |
|
| Q |
101 |
tcccaatcccatctacttttggtgcccactcatctatcacagcattctcatctctgcaatgctaatcctacattgttgttggttttttaccacctggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749314 |
tcccaatcccatctacttttggtgcccactcatctatcacagcattctcatctctgcaatgctaatcctacattgttgttggttttttaccacctggcat |
37749215 |
T |
|
| Q |
201 |
ttaattgtatataacattttgcaagtcttatagttctatgatacacttttctttaagtttgacgggtacctttcaagcacaatttatagctgaagcaatc |
300 |
Q |
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| T |
37749214 |
ttaatcgtatataacattttgcaagtcttatagttctgcgatacacttttctttaagtttgacgggtacctttcaagcacaatttatagccgaagcaatc |
37749115 |
T |
|
| Q |
301 |
cccaatttcatccaccctacttgaatccaatggttaacatcccccttatctccccttcgtttaacatccaccctactataccaagtgat |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749114 |
cccaatttcatccaccctacttgaatccaatggttaacatcccccttatctccccttcgtttaacatccaccctactataccaagtgat |
37749026 |
T |
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