View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8564_high_2 (Length: 383)

Name: NF8564_high_2
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8564_high_2
NF8564_high_2
[»] chr7 (3 HSPs)
chr7 (15-370)||(20707276-20707630)
chr7 (15-370)||(20875320-20875674)
chr7 (49-297)||(41594486-41594734)
[»] chr2 (2 HSPs)
chr2 (49-297)||(43523093-43523341)
chr2 (83-289)||(5086489-5086695)
[»] chr3 (1 HSPs)
chr3 (49-295)||(22511700-22511946)
[»] chr5 (3 HSPs)
chr5 (50-297)||(23123110-23123357)
chr5 (49-297)||(14007347-14007585)
chr5 (221-289)||(7348331-7348399)
[»] chr8 (1 HSPs)
chr8 (49-149)||(12869189-12869289)
[»] chr4 (1 HSPs)
chr4 (313-368)||(50413725-50413780)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 20707276 - 20707630
Alignment:
Q  15 ataactcctacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgtt 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20707276 ataactcttacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttaaaacgtgatcctggaaagcgtt 20707375  T
Q  115 cccaaatatggacatatccaccaaatcaagttgataaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtc 214  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  20707376 cccaaatatggacatatccactaaatcatgtt-ataaaatacgaagagcttattcgaattggggttcatattaaatatgtatagaagaatatcttttgtc 20707474  T
Q  215 tggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagggtgctgcannnnnnnat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||       ||    
T  20707475 tggtggagagaaacatccaagacggtttcaagacacttggtttagcatatttctttcatggctagaatatttaccttcaacggatgctgcattttttaat 20707574  T
Q  315 atcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20707575 atcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgt 20707630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 20875320 - 20875674
Alignment:
Q  15 ataactcctacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgtt 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20875320 ataactcttacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttaaaacgtgatcctggaaagcgtt 20875419  T
Q  115 cccaaatatggacatatccaccaaatcaagttgataaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtc 214  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  20875420 cccaaatatggacatatccactaaatcatgtt-ataaaatacgaagagcttattcgaattggggttcatattaaatatgtatagaagaatatcttttgtc 20875518  T
Q  215 tggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagggtgctgcannnnnnnat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||       ||    
T  20875519 tggtggagagaaacatccaagacggtttcaagacacttggtttagcatatttctttcatggctagaatatttaccttcaacggatgctgcattttttaat 20875618  T
Q  315 atcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20875619 atcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgt 20875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 49 - 297
Target Start/End: Original strand, 41594486 - 41594734
Alignment:
Q  49 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 148  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  41594486 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 41594585  T
Q  149 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 248  Q
    | ||||||||||||||||| ||||||||||| ||||| || |  || |||||||||||||||||||||||  ||   | ||||||||||||||| |||||    
T  41594586 tgaaatacgaagagcttatctgaattggggtccatatcaaatccatttagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagac 41594685  T
Q  249 acttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 297  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  41594686 acttggtttagcttatttcattcatggctagaatattcaccttcaaagg 41594734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 49 - 297
Target Start/End: Original strand, 43523093 - 43523341
Alignment:
Q  49 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 148  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  43523093 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 43523192  T
Q  149 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 248  Q
    | ||||||||||||||||||||||||||||| ||||| || |  || |||||||||||||||||||||||  ||   | ||||||||||||||| ||||     
T  43523193 tgaaatacgaagagcttatttgaattggggtccatatcaaatccatttagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagat 43523292  T
Q  249 acttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 297  Q
    |||||||||| |  ||||| |||||||||||||||||||||||||||||    
T  43523293 acttggtttaacttatttcattcatggctagaatattcaccttcaaagg 43523341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 289
Target Start/End: Original strand, 5086489 - 5086695
Alignment:
Q  83 gaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttgataaaatacgaagagcttatttgaattggggttca 182  Q
    |||| |||||||||||||||||| |||||||   | ||| |||  ||||||||| ||||||   |||  |||||||||||| ||| | || |||||| |     
T  5086489 gaattctttagaacgtgatcctgaaaagcgtattccaatttggcaatatccaccgaatcaaaaggatgcaatacgaagagcgtatctaaaatggggtcct 5086588  T
Q  183 tattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaat 282  Q
    ||| ||    |  ||||| | ||||| ||||||||||   ||||||||||||| |||||||||||||||||||| |||   |||| ||||||||||||||    
T  5086589 tatcaaacgaaattagaaaactatcccttgtctggtgagcagaaacatccaaggcggtttcaagacacttggttcagcttgtttccttcatggctagaat 5086688  T
Q  283 attcacc 289  Q
    |||||||    
T  5086689 attcacc 5086695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 49 - 295
Target Start/End: Complemental strand, 22511946 - 22511700
Alignment:
Q  49 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 148  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  22511946 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 22511847  T
Q  149 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 248  Q
    | ||||| ||||||||||| | |||||||||  |||| || |  || |||||||||||| ||||||||||  || | | ||||||||||||||| |||||    
T  22511846 tgaaatatgaagagcttatctaaattggggtctatatcaaatccatttagaagaatatcatttgtctggtaaaggggatcatccaagacggtttaaagac 22511747  T
Q  249 acttggtttagcaaatttctttcatggctagaatattcaccttcaaa 295  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||    
T  22511746 acttggtttagcttatttcattcatggctagaatattcaccttcaaa 22511700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 50 - 297
Target Start/End: Complemental strand, 23123357 - 23123110
Alignment:
Q  50 aattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttgat 149  Q
    |||||||||| ||||||||   | | ||||| |||||  |||||||||||||| || ||||||||||| ||||||||||| |||| ||||||| || |||    
T  23123357 aattgaagaattgcataacgcgggtgattttttgaattatttagaacgtgatcttgaaaagcgttccccaatatggacatttccagcaaatcatgtggat 23123258  T
Q  150 aaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagaca 249  Q
     ||||||||||||||||| ||||||||||| ||||| || |  || ||||||||||||||| |||||||  || | | ||||||||||||||| ||||||    
T  23123257 gaaatacgaagagcttatctgaattggggtccatatcaaatccatttagaagaatatccttcgtctggtaaaggggatcatccaagacggtttaaagaca 23123158  T
Q  250 cttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 297  Q
    |||||||||||   |||  |||||||||||||||||||||||||||||    
T  23123157 cttggtttagcttgttttattcatggctagaatattcaccttcaaagg 23123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 297
Target Start/End: Original strand, 14007347 - 14007585
Alignment:
Q  49 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 148  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  14007347 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 14007446  T
Q  149 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 248  Q
    | ||||||||||||||||| | ||||||||| ||||| ||          ||||||||||||||||||||  ||   | ||||||||||||||| |||||    
T  14007447 tgaaatacgaagagcttatctaaattggggtccatatcaa----------aagaatatcctttgtctggtacaggagatcatccaagacggtttaaagac 14007536  T
Q  249 acttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 297  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  14007537 acttggtttagcttatttcattcatggctagaatattcaccttcaaagg 14007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 7348331 - 7348399
Alignment:
Q  221 agagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcacc 289  Q
    |||||| ||||||||  |||||||| ||||||||||| |||  |||| ||  |||||||||||||||||    
T  7348331 agagaatcatccaaggtggtttcaacacacttggtttggcatgtttcctttgtggctagaatattcacc 7348399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 12869289 - 12869189
Alignment:
Q  49 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 148  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||| |||| ||||||| |||||    
T  12869289 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatacggacatttccagcaaatcatgttga 12869190  T
Q  149 t 149  Q
    |    
T  12869189 t 12869189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 50413725 - 50413780
Alignment:
Q  313 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgat 368  Q
    |||| |||||||||||||||||||||||||||| ||||| |||| |||||| ||||    
T  50413725 atatgagatatgttacaaacactacatctttaactcttaaggaagcagtgtgtgat 50413780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University