View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8564_high_3 (Length: 330)
Name: NF8564_high_3
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8564_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 33563460 - 33563789
Alignment:
| Q |
1 |
ttgtatattggcatacctaacccttgtgtgcgtgtaatggcaggtttctgctgtacgagtacatgggaaatggaagcttaaaagatcatcttcattgtat |
100 |
Q |
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| T |
33563460 |
ttgtatattggcatacctaacccttgtgtgcgtgtaatggcaggtttctgctgtacgagtacatgggaaatggaagcttaaaagatcatcttcattgtat |
33563559 |
T |
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| Q |
101 |
gcctattgttttctctggcatgttgaagatattatttgaacagattacaaattnnnnnnncctttatttcgctctcatgtgcatgaattcctattctaat |
200 |
Q |
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| T |
33563560 |
gcctattgttttctctggcatgtttaagatattatttgaacggattacaaattaaaaaaacctttatctcgctctcatgtgcatgaattcctattctaat |
33563659 |
T |
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| Q |
201 |
tttgtgtgcttttgtgcaacatctaattagcatcaccttctaccatactgaatacggaaataatacatggatgcaacaaatgaatggcattaaaatagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33563660 |
tttgtgtgcttttgtgcaacatctaattagcatcaccttctaccatactgaatacggaaataatacatggatgcaacaaatgaatggcattaaaatagtg |
33563759 |
T |
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| Q |
301 |
agaaaacaaacaatatactagcttgtttcc |
330 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
33563760 |
agaaaacagacaatatactagcttgtttcc |
33563789 |
T |
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