View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8564_high_4 (Length: 317)
Name: NF8564_high_4
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8564_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 4255849 - 4255542
Alignment:
| Q |
10 |
gtgttggcggatctgctgtgggaaacctagatttctacaatccacgatggacaaactctttaaggatgcgggtaaacaatctcctggaaattatatctca |
109 |
Q |
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| T |
4255849 |
gtgttggcggttctgctgtgggaaacctagatttctacaatccacgatggacaaactctttaaggatgcgggtaaacaatctcctggaaatgatatctca |
4255750 |
T |
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| Q |
110 |
aacgaacaatccctgatatctaaagtttgaagagaacttaagggggcaatggaaatggcttcaaagacgaacttcgtcacctcttttccttgaattctca |
209 |
Q |
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| T |
4255749 |
aacgaacaatccctgatatctaaagtttgaagagaacttaagggggcaatggaaatggcttaaaagacgaacttcgtcacctcttttccttgaattctca |
4255650 |
T |
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| Q |
210 |
actctttcaatgaaaggggtaactcatgcaaagctacgttattgctatcacatatttctattgtgcgtatggaagaagcccttgggagagaagaagaaag |
309 |
Q |
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| T |
4255649 |
actctttcaatgaaaggggtaactcatgcaaagctacgttattgctatcacatatttctattgtgtgtatggaagaagcccttgggagagaagaagaaag |
4255550 |
T |
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| Q |
310 |
ttggccgc |
317 |
Q |
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| T |
4255549 |
ttggccgc |
4255542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 34800831 - 34800939
Alignment:
| Q |
37 |
tagatttctacaatccacgatggacaaactctttaaggatgcgggtaaacaatctcctggaaattatatctcaaacgaacaatccctgatatctaaagtt |
136 |
Q |
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|||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||| |||||||||||| ||| |
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| T |
34800831 |
tagatttctacaattctggatgtacaaactctttaaggatgcaagtaaacaatctcctggaaatgatatttcagacgaacaattcctgatatctaatgtt |
34800930 |
T |
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| Q |
137 |
tgaagagaa |
145 |
Q |
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| T |
34800931 |
ctaagagaa |
34800939 |
T |
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