View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8564_high_5 (Length: 240)
Name: NF8564_high_5
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8564_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33340864 - 33341086
Alignment:
| Q |
1 |
aaatgccatcggaatagactacgacacgatctggctccttgatgatacaaatatctgaatcttctattcccattgcactatataacaaagaaatgtcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33340864 |
aaatgccatcggaatagactacgacacgatctggctccttgatgatacaaatatctgaatcttctattcccattgcactatataacaaagaaatgtcaga |
33340963 |
T |
|
| Q |
101 |
acaaaagaaattgaattgttaactgaatgtacaatctttcacataaaagctatatagttaaattgtttcacaaaatctttctatagaaaaacaaaatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33340964 |
acaaaagaaattgaattgttaactgaatgtacaatctttcacataaaagctatatagttaaattgtttcacaaaatctttctatagaaaaacaaaatcaa |
33341063 |
T |
|
| Q |
201 |
ttatcttacataggtacagattc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33341064 |
ttatcttacataggtacagattc |
33341086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 12844516 - 12844550
Alignment:
| Q |
38 |
cttgatgatacaaatatctgaatcttctattccca |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844516 |
cttgatgatacaaatatctgaatcttctattccca |
12844550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University