View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8564_low_1 (Length: 683)

Name: NF8564_low_1
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8564_low_1
NF8564_low_1
[»] chr2 (4 HSPs)
chr2 (18-327)||(32772519-32772861)
chr2 (425-649)||(10978435-10978660)
chr2 (425-643)||(15017144-15017379)
chr2 (425-642)||(5325232-5325461)
[»] chr6 (9 HSPs)
chr6 (425-649)||(503962-504186)
chr6 (425-643)||(8263731-8263949)
chr6 (425-649)||(19226999-19227223)
chr6 (425-649)||(33639406-33639627)
chr6 (493-643)||(5086460-5086610)
chr6 (425-643)||(33019450-33019684)
chr6 (425-532)||(15644174-15644281)
chr6 (425-488)||(5086631-5086694)
chr6 (163-220)||(232903-232960)
[»] chr7 (12 HSPs)
chr7 (425-649)||(25923556-25923780)
chr7 (425-649)||(34519035-34519259)
chr7 (425-649)||(45987534-45987759)
chr7 (425-639)||(17804434-17804645)
chr7 (504-640)||(6970569-6970705)
chr7 (425-643)||(21439346-21439580)
chr7 (523-630)||(27941944-27942051)
chr7 (425-490)||(6970402-6970467)
chr7 (523-642)||(7377313-7377432)
chr7 (425-474)||(14053995-14054044)
chr7 (425-474)||(14364023-14364072)
chr7 (523-630)||(39060192-39060299)
[»] chr1 (5 HSPs)
chr1 (425-649)||(25505424-25505648)
chr1 (425-649)||(24314505-24314729)
chr1 (425-643)||(7178355-7178589)
chr1 (425-642)||(34709353-34709590)
chr1 (524-642)||(43810394-43810512)
[»] chr4 (16 HSPs)
chr4 (425-649)||(7472893-7473116)
chr4 (425-649)||(8934587-8934811)
chr4 (425-649)||(19644476-19644700)
chr4 (432-649)||(33988199-33988416)
chr4 (425-625)||(23118921-23119121)
chr4 (425-570)||(23657158-23657303)
chr4 (425-516)||(49926503-49926594)
chr4 (433-643)||(48031579-48031804)
chr4 (525-643)||(19114021-19114139)
chr4 (525-643)||(30310034-30310149)
chr4 (523-630)||(29554190-29554297)
chr4 (425-490)||(30309917-30309982)
chr4 (425-490)||(19113904-19113969)
chr4 (588-633)||(3861223-3861268)
chr4 (588-633)||(3869980-3870025)
chr4 (569-618)||(25875152-25875201)
[»] scaffold0108 (1 HSPs)
scaffold0108 (425-649)||(10394-10618)
[»] chr8 (5 HSPs)
chr8 (425-649)||(4988496-4988720)
chr8 (425-639)||(36318931-36319145)
chr8 (425-490)||(13909097-13909162)
chr8 (504-578)||(13909192-13909266)
chr8 (163-220)||(28419529-28419586)
[»] chr3 (6 HSPs)
chr3 (425-643)||(51144534-51144768)
chr3 (504-643)||(20894191-20894330)
chr3 (524-633)||(54558876-54558985)
chr3 (425-490)||(20894360-20894425)
chr3 (163-220)||(50810155-50810212)
chr3 (163-220)||(50865650-50865707)
[»] chr5 (6 HSPs)
chr5 (513-643)||(22095687-22095817)
chr5 (513-577)||(5415650-5415714)
chr5 (504-636)||(11575137-11575268)
chr5 (603-649)||(5415576-5415622)
chr5 (433-490)||(11575299-11575356)
chr5 (425-473)||(5415715-5415763)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 32772861 - 32772519
Alignment:
18 aaatgctatcttcttgtgatactctttcaacttctactacttgttttgtttcttcttcaa---------------tgttgtaaccttgttctacttcttg 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||    
32772861 aaatgctatctacttgtgatactctttcaacttctactacttgttttgtttcttcttcaacttgctccatttcaatgttgtaaccttgttctacttcttg 32772762  T
103 ttccacttcatgttccacatctacactatcctcatcttgtgcttgttctacatcttcaa------------------cttggtcttgttctttgtgaaga 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
32772761 ttccacttcatgttccacatctacactatcctcatcttgtgcttgttctacatcttcaatttgatgatgttcttcaacttggtcttgttctttgtgaaga 32772662  T
185 ggtgattcccaaaaacggttagctaaagcagccattttaacaggatcagatctacacctcatcaacaaaagagcattctttggtggaacacaaatactaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32772661 ggtgattcccaaaaacggttagctaaagcagccattttaacaggatcagatctacacctcatcaacaaaagagcattctttggtggaacacaaatactaa 32772562  T
285 ctctacctttctcttcatcttcttctacttcaccaccaaactc 327  Q
    |||||||||||||||||||||||||||||||||||||||||||    
32772561 ctctacctttctcttcatcttcttctacttcaccaccaaactc 32772519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 10978660 - 10978435
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||    
10978660 aacaattaaaaatgggattatattaacaacaagagtctcaatagcacaagatgtgccacaaagactacttcaggattatgtacaacagcaaaaacaagtt 10978561  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaa-aaaagaagtttttctagctttcaaccaacctaaagacaaatatt 623  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| |  ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
10978560 agccaatactcaaacattgtaacgggtttgaccaccaactaaaaatatcaaacaaaaaaagaagcttttctagctttcaaccaacctaaagacaaatatt 10978461  T
624 ttactttatcaagcaacctgtgtaaa 649  Q
    |||||||||||||||||||| |||||    
10978460 ttactttatcaagcaacctgggtaaa 10978435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 15017144 - 15017379
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact----------acttca-------gaattctgtac 507  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||          ||  ||       ||| || ||||    
15017144 aacaataaaaaatggaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagtac 15017243  T
508 aacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaa 607  Q
    |||| | ||||||| | | |||||||||||||||||||| ||  ||||||||||||||  |||| |||||| ||||||   ||||||| |||||||||||    
15017244 aacaacgaaaccaactcaaccaatacccaaacattgtaaagggcttgaccaccaactattagtgtcaaacataaaagagacttttctaactttcaaccaa 15017343  T
608 cctaaagacaaatattttactttatcaagcaacctg 643  Q
    ||||| ||||||||||||||||| ||||||||||||    
15017344 cctaaggacaaatattttactttgtcaagcaacctg 15017379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 642
Target Start/End: Original strand, 5325232 - 5325461
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattct------------gtacaacag 512  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||  |  ||||                ||||||||     
5325232 aacaatcaaaaatgaaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtacaacaa 5325331  T
513 caaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaa 612  Q
    | ||||||| | |||||||| ||||||||||||| ||  ||||||||||||||  ||||||||||| ||||||   ||||||| ||||||||||||||||    
5325332 cgaaaccaactcagccaatatccaaacattgtaaagggcttgaccaccaactattagtgccaaacataaaagagacttttctaactttcaaccaacctaa 5325431  T
613 agacaaatattttactttatcaagcaacct 642  Q
     |||| |||||||||||| |||||||||||    
5325432 ggacagatattttactttgtcaagcaacct 5325461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 504186 - 503962
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
504186 aacaatcaaaaatggaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaaatctgtacaacagcaaaaccaagtt 504087  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
504086 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 503987  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    ||||||||||||||||||| |||||    
503986 tactttatcaagcaacctgggtaaa 503962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 8263731 - 8263949
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
8263731 aacaataaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcaatattctgtacaacagcaaaaccaagtt 8263830  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
8263831 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaataaagaagcttttctagctttcaaccaacctaaagacaaatattt 8263930  T
625 tactttatcaagcaacctg 643  Q
    |||||||||||||||||||    
8263931 tactttatcaagcaacctg 8263949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 19226999 - 19227223
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||| | ||||| ||||||    
19226999 aacaatcaaaaatggaattaaattaacaacaagagtctcaatagcacaagatgtgccacaaagactactacagagttcagtacaataacaaaaacaagtt 19227098  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
19227099 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctagagacaaatattt 19227198  T
625 tactttatcaagcaacctgtgtaaa 649  Q
     ||||| |||||||||||| |||||    
19227199 aactttgtcaagcaacctgagtaaa 19227223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 33639406 - 33639627
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||||||||||||||||   |||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||| ||||| ||||||    
33639406 aacaatcaaaaatgaaattatattaaca---agagtctcaatagcacaagatgtgtcacaaagactacttcagagttcagtacaacaacaaaaacaagtt 33639502  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||  |||||||||||    
33639503 agccgatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaaccaacctagggacaaatattt 33639602  T
625 tactttatcaagcaacctgtgtaaa 649  Q
     ||||| |||||||||||| |||||    
33639603 aactttgtcaagcaacctgggtaaa 33639627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 493 - 643
Target Start/End: Complemental strand, 5086610 - 5086460
Alignment:
493 ttcagaattctgtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagttttt 592  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||| ||  |||||||||| |||| |||||||||||||||||| | ||||    
5086610 ttcagaagtctgtacaacaacaaaaccaacttagccaatactcaaacattgtaaaggggttgaccaccatctaatagtgccaaacaaaaaagaggctttt 5086511  T
593 ctagctttcaaccaacctaaagacaaatattttactttatcaagcaacctg 643  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||||||    
5086510 ctagctttcaaccaacctaaggacgaatattttactttgtcgagcaacctg 5086460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 33019450 - 33019684
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact----------------acttcagaattctgtaca 508  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||| ||||||||                | |  |||| || ||||     
33019450 aacaataaaaaatgtaattatattaacaacaagagcctcattagcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtact 33019549  T
509 acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac 608  Q
    ||| ||||||||| | |||||||||||||||||||||| ||  ||||||||||||||  ||| ||||||| ||||||   ||||||||||||||||||||    
33019550 acaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaac 33019649  T
609 ctaaagacaaatattttactttatcaagcaacctg 643  Q
    |||||||||||||||||||||||||||||||||||    
33019650 ctaaagacaaatattttactttatcaagcaacctg 33019684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 425 - 532
Target Start/End: Complemental strand, 15644281 - 15644174
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||    
15644281 aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaaaactacttcagaattcagtacaacaacaaaaccaagtt 15644182  T
525 agccaata 532  Q
    ||||||||    
15644181 agccaata 15644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 5086694 - 5086631
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaaga 488  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||||| | |||| ||||||    
5086694 aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaaggcatgcctcaaaga 5086631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 232903 - 232960
Alignment:
163 ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt 220  Q
    ||||||||||| ||| |||||||| |||||||||||||  ||||| ||||||||||||    
232903 ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt 232960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 25923556 - 25923780
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
25923556 aacaatcaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcaggattctgtacaacagcaaaaccaagtt 25923655  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
25923656 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagctttcagccaacctaaagacaaatattt 25923755  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    ||||||||||||||||||| |||||    
25923756 tactttatcaagcaacctgggtaaa 25923780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 34519259 - 34519035
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||| ||||| ||||||    
34519259 aacaatcaaaaatgaaataatattaacaacaagagtctcaatagcacaagatgtgccacaaagactactacagagttcagtacaacaacaaaaacaagtt 34519160  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
34519159 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctagagacaaatattt 34519060  T
625 tactttatcaagcaacctgtgtaaa 649  Q
     ||||| |||||||||||| |||||    
34519059 aactttgtcaagcaacctgggtaaa 34519035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 45987534 - 45987759
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcaga-attctgtacaacagcaaaaccaagt 523  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||| ||||| |||||    
45987534 aacaatcaaaaatggaattatattaacaacaagagtctcaatagcacaagatgtgccacaaagactactacagagattcagtacaacaacaaaaacaagt 45987633  T
524 tagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatatt 623  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
45987634 tagccaatacccaaacattataacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctagagacaaatatt 45987733  T
624 ttactttatcaagcaacctgtgtaaa 649  Q
    | ||||| |||||||||||| |||||    
45987734 taactttgtcaagcaacctgggtaaa 45987759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 639
Target Start/End: Original strand, 17804434 - 17804645
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||  ||||||||||||   ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||    
17804434 aacaatcaaaaatgggattatattaaca---agagtctcaatagcacaagacgtgctacaaagactacttcaggattctgtacaacaacaaaatcaagtt 17804530  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
17804531 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagttttcaaccaacctaaagacaaatattt 17804630  T
625 tactttatcaagcaa 639  Q
    |||||||||||||||    
17804631 tactttatcaagcaa 17804645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 504 - 640
Target Start/End: Original strand, 6970569 - 6970705
Alignment:
504 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaa 603  Q
    |||||||| ||||| ||| | |||||||||||||||||||||| ||  ||||||||||||||  ||| ||||||| |||||||  ||||||| |||||||    
6970569 gtacaacaacaaaatcaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagaaacttttctaactttcaa 6970668  T
604 ccaacctaaagacaaatattttactttatcaagcaac 640  Q
    || |||||||||||||||||||||||| |||||||||    
6970669 ccgacctaaagacaaatattttactttgtcaagcaac 6970705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 425 - 643
Target Start/End: Complemental strand, 21439580 - 21439346
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact---------acttca-------gaattctgtaca 508  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||         ||  ||       ||| || |||||    
21439580 aacaatcaaaaatgaaattatattaacaacaagagtctcattagcgcaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtaca 21439481  T
509 acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac 608  Q
    ||| | ||||||| | |||||||||||||||||||||| ||  ||||||||||||||  |||||||| || ||||||   ||||||| ||||||||||||    
21439480 acaacgaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaagcataaaagagacttttctacctttcaaccaac 21439381  T
609 ctaaagacaaatattttactttatcaagcaacctg 643  Q
    |||| ||||||||||||||||| ||||||||||||    
21439380 ctaaggacaaatattttactttgtcaagcaacctg 21439346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 27942051 - 27941944
Alignment:
523 ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat 622  Q
    ||||||||||||||||||||| || ||  |||||||||| |||  ||| |||||| ||||   || |||| |||||||||||||| |||||||||| |||    
27942051 ttagccaatacccaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaatatagcttttttagctttcaaccaagctaaagacaagtat 27941952  T
623 tttacttt 630  Q
    ||||||||    
27941951 tttacttt 27941944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 6970402 - 6970467
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact 490  Q
    |||||| |||||||||||||||||||||||||||| |||  ||||||||| |||||| ||||||||    
6970402 aacaatcaaaaatgaaattatattaacaacaagagcctcgttagcacaaggcgtgcctcaaagact 6970467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 642
Target Start/End: Original strand, 7377313 - 7377432
Alignment:
523 ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat 622  Q
    ||||||||||||||||||||| || ||  |||||||||| |||  ||| |||||| |||| |  |  ||| || |||||| ||||||||||||||| |||    
7377313 ttagccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaaacgaaaatgtggcatttttaactttcagccaacctaaagacaagtat 7377412  T
623 tttactttatcaagcaacct 642  Q
    |||||||| || ||||||||    
7377413 tttactttgtccagcaacct 7377432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 14053995 - 14054044
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaag 474  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||||||    
14053995 aacaatcaaaaatggaattatattaacaataagagtctcaatagcacaag 14054044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 14364023 - 14364072
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaag 474  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||||||    
14364023 aacaatcaaaaatggaattatattaacaataagagtctcaatagcacaag 14364072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 39060299 - 39060192
Alignment:
523 ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat 622  Q
    ||||| |||||| |||||||| || || ||||||||||| |||  ||| |||||| ||||  ||  |||| ||| |||||||||| |||||||||| |||    
39060299 ttagctaatacctaaacattgaaaagggtttgaccaccacctatcagtaccaaacgaaaataaaacttttttagttttcaaccaagctaaagacaagtat 39060200  T
623 tttacttt 630  Q
    ||||||||    
39060199 tttacttt 39060192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 25505648 - 25505424
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
25505648 aacaattaaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaagactacttcagaattctgtacaacaacaaaaccaagtt 25505549  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
25505548 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacttaaagacaaatattt 25505449  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    ||||||||||||||||||| |||||    
25505448 tactttatcaagcaacctgggtaaa 25505424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 24314505 - 24314729
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
24314505 aacaatcaaaaatgaaattatattaacaacaggagtctcactagcacaagacgtgccacaaagactacttcagaattctatacaaccacaaaaccaagtt 24314604  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
24314605 agccaatacccaaacattgtaacgggtttgaccaccaactaatagtgccaaacaaaaaagaagtttttctagccttcaaccaacctaaagacaaatattt 24314704  T
625 tactttatcaagcaacctgtgtaaa 649  Q
     |||||||||||||||||| |||||    
24314705 aactttatcaagcaacctgggtaaa 24314729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 7178355 - 7178589
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact---------acttca-------gaattctgtaca 508  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||         ||  ||       ||| || |||||    
7178355 aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtaca 7178454  T
509 acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac 608  Q
    ||| | ||||||| | |||||||||||||||||||||| ||  ||||||||||||||  ||||||||| | ||||||   ||||||||||||||||||||    
7178455 acaacgaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaaccaac 7178554  T
609 ctaaagacaaatattttactttatcaagcaacctg 643  Q
    ||||||||| |||||||||||| ||||||||||||    
7178555 ctaaagacagatattttactttgtcaagcaacctg 7178589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 425 - 642
Target Start/End: Complemental strand, 34709590 - 34709353
Alignment:
425 aacaataaaaaatgaaattatattaaca----acaagagtctcaatagcacaagacgtgccacaaagact---------acttcag-----aat--tctg 504  Q
    |||||| ||||||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||         ||  |||     |||  ||||    
34709590 aacaatcaaaaatggaattatattaacagcacacaagagtctcaatagcacaagacgtgccacaaagactcctcaggaaacaacagtgtccaattgtctg 34709491  T
505 tacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaac 604  Q
    ||| ||| ||||||||| |||| |||| |||| ||||||||| ||  ||||| |||| |||  ||||||||||||||||| || |||||||| || || |    
34709490 tacgacaacaaaaccaacttagtcaatgcccagacattgtaaagggcttgacaaccacctatcagtgccaaacaaaaaagtagcttttctagtttccagc 34709391  T
605 caacctaaagacaaatattttactttatcaagcaacct 642  Q
    |||||||||||||||||||||||||| || ||||||||    
34709390 caacctaaagacaaatattttactttgtcgagcaacct 34709353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 642
Target Start/End: Original strand, 43810394 - 43810512
Alignment:
524 tagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatatt 623  Q
    |||||||||||||||||||| || ||  |||||||||| |||  ||| |||| | |||| | |  |||||||||||||||||||||||||||||| ||||    
43810394 tagccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaagcgaaaatgtaacttttctagctttcaaccaacctaaagacaagtatt 43810493  T
624 ttactttatcaagcaacct 642  Q
    |||||||||| | ||||||    
43810494 ttactttatccaacaacct 43810512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 7472893 - 7473116
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||    
7472893 aacaataaaaaatggaattatattaataacaagagtctcaatagcacaagacgtgccataaatactacttcagaattttgtacaac-gcaaaaccaagtt 7472991  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
7472992 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcttttctagctttcaaccaacctaaagacaaatattt 7473091  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    ||||||||||||||||||| |||||    
7473092 tactttatcaagcaacctgggtaaa 7473116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 8934587 - 8934811
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
8934587 aacaatcaaaaatggaattatattaacaacaatagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacaacaaaaccaagtt 8934686  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
8934687 agccaatacccaaacattataacgggtttgaccaccaactaaaagttccaaacaaaaaagaagcttttctagctttcaaccaacctaaagacaaatagtt 8934786  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    ||||||||||||||||||| |||||    
8934787 tactttatcaagcaacctgggtaaa 8934811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 19644476 - 19644700
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||    
19644476 aacaatcaaaaatggaattatattaacaacaagagtctcaatagcacaagatgtgccacaaagactacttcagaattcagtacaacaacaaaaacaagtt 19644575  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
19644576 agccaatacccaaacattgtaacgggtttgaccaccaactaaaaatgccaaacaaaaaagaagcgtttctagctttcaaccaacctaaagacaaatattt 19644675  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    |||||| |||||||||||| |||||    
19644676 tactttgtcaagcaacctgggtaaa 19644700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 432 - 649
Target Start/End: Complemental strand, 33988416 - 33988199
Alignment:
432 aaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagttagccaat 531  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
33988416 aaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaagactacttcagaattcagtacaacaacaaaaccaagttagccaat 33988317  T
532 acccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattttacttta 631  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||     
33988316 acccaaacattgtaacgggtttgaccaccaattaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctaaagataaatattttactttg 33988217  T
632 tcaagcaacctgtgtaaa 649  Q
    |||||||||||| |||||    
33988216 tcaagcaacctgggtaaa 33988199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 625
Target Start/End: Original strand, 23118921 - 23119121
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| |    
23118921 aacaatcaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccaccaagactacttcaaaattctgtacaacaacaaaaccaagct 23119020  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
23119021 agccaatacccagacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaaaaagtttttctagctttcaaccaacctaaagacaaatattt 23119120  T
625 t 625  Q
    |    
23119121 t 23119121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 425 - 570
Target Start/End: Original strand, 23657158 - 23657303
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |    
23657158 aacaattaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccaccaagactacttcagaattctgtacaacaacaaaaccaagct 23657257  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagt 570  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||    
23657258 agccaatacctagacattgtaacgggtttgaccaccaactaaaagt 23657303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 425 - 516
Target Start/End: Complemental strand, 49926594 - 49926503
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaa 516  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
49926594 aacaataaaaaatagaattatattaacaacaagagtctcattagcacaagacgtgccacaaagattacttcagaattctgtacaacaacaaa 49926503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 433 - 643
Target Start/End: Complemental strand, 48031804 - 48031579
Alignment:
433 aaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactact----------------tcagaattctgtacaacagcaaa 516  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |                |||| | | | ||||||| ||||    
48031804 aaaatggaattatattaacaacaagagtctcaatagcacaaggcgtgccacaaagactagtcaagaaacagcaaagttcaggagtatctacaacaacaaa 48031705  T
517 accaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagac 616  Q
    ||||| |||||||||||||| | ||||||| || || | |||||| |||  ||||||||| ||||||| |  |||||||||||| |||||||||||||||    
48031704 accaacttagccaatacccagaaattgtaaaggctt-gcccaccatctattagtgccaaataaaaaagtaacttttctagcttttaaccaacctaaagac 48031606  T
617 aaatattttactttatcaagcaacctg 643  Q
    |||||||||||||| || || ||||||    
48031605 aaatattttactttgtcgagtaacctg 48031579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 19114021 - 19114139
Alignment:
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||| |||||||||||| ||  |||| |||||||||  ||||||||||| |||| |   |||||||||||||||||||||||| |||||||||||    
19114021 agccaatactcaaacattgtaaagggcttgatcaccaactatgagtgccaaacataaaatagacttttctagctttcaaccaacctaaggacaaatattt 19114120  T
625 tactttatcaagcaacctg 643  Q
    |||||| ||||||||||||    
19114121 tactttgtcaagcaacctg 19114139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 30310034 - 30310149
Alignment:
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    |||||||| ||||||||||||| || ||||||||||||  |   |||||||||| ||||||   |||||||||||||||||||||||| |||||||||||    
30310034 agccaatatccaaacattgtaaagggtttgaccaccaatga---gtgccaaacataaaagagacttttctagctttcaaccaacctaaggacaaatattt 30310130  T
625 tactttatcaagcaacctg 643  Q
    |||||| ||||||||||||    
30310131 tactttgtcaagcaacctg 30310149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 29554297 - 29554190
Alignment:
523 ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat 622  Q
    ||||||||||| ||||||||| || ||  |||||||||| |||  ||| |||||| ||||  ||| |||| |||||||||||||| |||||||||| |||    
29554297 ttagccaatactcaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaataaagcttttttagctttcaaccaagctaaagacaagtat 29554198  T
623 tttacttt 630  Q
    ||||||||    
29554197 tttacttt 29554190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 30309917 - 30309982
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact 490  Q
    |||||| ||||||| ||||||||||||||||||||||||  ||||||||| |||||| ||||||||    
30309917 aacaatcaaaaatggaattatattaacaacaagagtctcgttagcacaaggcgtgcctcaaagact 30309982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 19113904 - 19113969
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact 490  Q
    |||||| ||||||| ||||||||||||||||||||| ||| ||||||||| | |||| ||||||||    
19113904 aacaatcaaaaatggaattatattaacaacaagagtgtcattagcacaaggcatgcctcaaagact 19113969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 3861223 - 3861268
Alignment:
588 tttttctagctttcaaccaacctaaagacaaatattttactttatc 633  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||    
3861223 tttttttagctttcatccagcctaaagacaaatattttactttatc 3861268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 3869980 - 3870025
Alignment:
588 tttttctagctttcaaccaacctaaagacaaatattttactttatc 633  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||    
3869980 tttttttagctttcatccagcctaaagacaaatattttactttatc 3870025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 25875201 - 25875152
Alignment:
569 gtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaa 618  Q
    |||||||| | ||| | ||||||| |||||||||||||||||||||||||    
25875201 gtgccaaaaacaaaggtagtttttttagctttcaaccaacctaaagacaa 25875152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 10394 - 10618
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||    
10394 aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaagacgtgctacaaagactacttcagaattcagcacaacaacaaaaccaagtt 10493  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
10494 agccaatacccaaacattgtaacgggtttaaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctaaagacaaatattt 10593  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    |||||| |||||||||||| |||||    
10594 tactttgtcaagcaacctgggtaaa 10618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 4988720 - 4988496
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| ||||||  |||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||| | ||||| ||||||    
4988720 aacaatcaaaaatagaattatattaccaacaagagtctcaatagcacaagatgtgccataaagactacatcagaattcagtacaataacaaaaacaagtt 4988621  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
4988620 agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaaccaacctaaagacaaatattt 4988521  T
625 tactttatcaagcaacctgtgtaaa 649  Q
    |||||| |||||||||||| |||||    
4988520 tactttgtcaagcaacctgggtaaa 4988496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 425 - 639
Target Start/End: Complemental strand, 36319145 - 36318931
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt 524  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| ||||||||||||||||||||    
36319145 aacaatcaaaaatgggattatattaacaacaagagtctcaatagcacaagatgtgtcataaagactacttcaggattctctacaacagcaaaaccaagtt 36319046  T
525 agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt 624  Q
    |||||||||| ||||||||||| || |||||||||||||||||| | |||||||||||||||  |||||||||||||| |||||||||||| ||||||||    
36319045 agccaatacctaaacattgtaaagggtttgaccaccaactaaaactaccaaacaaaaaagaaacttttctagctttcagccaacctaaagataaatattt 36318946  T
625 tactttatcaagcaa 639  Q
    |||||||||||||||    
36318945 tactttatcaagcaa 36318931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 13909097 - 13909162
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact 490  Q
    |||||| |||||||||||||||||||||||||||| || | ||||||||| |||||| ||||||||    
13909097 aacaatcaaaaatgaaattatattaacaacaagagccttattagcacaaggcgtgcctcaaagact 13909162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 578
Target Start/End: Original strand, 13909192 - 13909266
Alignment:
504 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaaca 578  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||  ||||||||||||||  ||| |||||||    
13909192 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaaca 13909266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 28419529 - 28419586
Alignment:
163 ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt 220  Q
    ||||||||||| ||| |||||||| |||||||||||||  ||||| ||||||||||||    
28419529 ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt 28419586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 51144534 - 51144768
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactact----------------tcagaattctgtaca 508  Q
    |||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||| |||||| ||                |||| | ||| ||||    
51144534 aacaataaaaaatggaattatataaacaaccagagtctcattagcacaagacgtgccaccaagactcctcaagaaacaacaaagttcagtagtctttaca 51144633  T
509 acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac 608  Q
    ||| ||||||||| |||||||||||||| ||||||||| ||  ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
51144634 acaacaaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgccaaacaaaaaagtagtttttctagctttcaaccaac 51144733  T
609 ctaaagacaaatattttactttatcaagcaacctg 643  Q
    ||||||||||||||||||||||  | |||||||||    
51144734 ctaaagacaaatattttactttgccgagcaacctg 51144768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 504 - 643
Target Start/End: Complemental strand, 20894330 - 20894191
Alignment:
504 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaa 603  Q
    |||||||| | ||||||  | |||||||||||||||||||||| ||  ||||||||||||||  ||||||||| | ||||||   |||||||||||||||    
20894330 gtacaacaacgaaaccatctcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaa 20894231  T
604 ccaacctaaagacaaatattttactttatcaagcaacctg 643  Q
    ||||| ||| || | |||||||||||| ||||||||||||    
20894230 ccaacttaaggatagatattttactttgtcaagcaacctg 20894191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 524 - 633
Target Start/End: Complemental strand, 54558985 - 54558876
Alignment:
524 tagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatatt 623  Q
    |||||||||||||||||||| || ||  |||||||||| |||  ||| || ||| |||| | |  |||| ||||||||||||||| ||||||||||||||    
54558985 tagccaatacccaaacattggaaagggcttgaccaccacctatcagtacctaacgaaaatgtaacttttttagctttcaaccaacttaaagacaaatatt 54558886  T
624 ttactttatc 633  Q
    ||||||||||    
54558885 ttactttatc 54558876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 20894425 - 20894360
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact 490  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||| ||| |||||| ||||||||    
20894425 aacaattaaaaatggaattatattaacaacaagagtctcattagcataaggcgtgcctcaaagact 20894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 50810155 - 50810212
Alignment:
163 ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt 220  Q
    ||||||||||| ||| |||||||| |||||||||||||  ||||| ||||||||||||    
50810155 ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt 50810212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 50865707 - 50865650
Alignment:
163 ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt 220  Q
    ||||||||||| ||| |||||||| |||||||||||||  ||||| ||||||||||||    
50865707 ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt 50865650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 513 - 643
Target Start/End: Complemental strand, 22095817 - 22095687
Alignment:
513 caaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaa 612  Q
    ||||||||| |||||||||||||| ||||||||| ||  ||||||||||||||  |||| ||||||||| || || ||||||||||||||||||||||||    
22095817 caaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgtcaaacaaaagagtagcttttctagctttcaaccaacctaa 22095718  T
613 agacaaatattttactttatcaagcaacctg 643  Q
    |||||||||||||||||| || |||||||||    
22095717 agacaaatattttactttgtcgagcaacctg 22095687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 513 - 577
Target Start/End: Complemental strand, 5415714 - 5415650
Alignment:
513 caaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaac 577  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
5415714 caaaacaaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaac 5415650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 636
Target Start/End: Complemental strand, 11575268 - 11575137
Alignment:
504 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaaca-aaaaagaagtttttctagctttca 602  Q
    |||||||| | | ||||| | |||||||||||||||||||||| ||  ||||||||||||||  ||||||||||| ||| |||   ||||||||||||||    
11575268 gtacaacaacgacaccaactaagccaatacccaaacattgtaaagggcttgaccaccaactatgagtgccaaacataaataga--cttttctagctttca 11575171  T
603 accaacctaaagacaaatattttactttatcaag 636  Q
    ||||| |||| ||||||||||||||||| |||||    
11575170 accaatctaaggacaaatattttactttgtcaag 11575137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 649
Target Start/End: Complemental strand, 5415622 - 5415576
Alignment:
603 accaacctaaagacaaatattttactttatcaagcaacctgtgtaaa 649  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||    
5415622 accaacctaaacacaaatattttactttatcaagcaacctgggtaaa 5415576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 11575356 - 11575299
Alignment:
433 aaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact 490  Q
    |||||| ||||||||||||||||||||||||| ||||||||  |||||| |||| |||    
11575356 aaaatggaattatattaacaacaagagtctcattagcacaaagcgtgcctcaaatact 11575299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 473
Target Start/End: Complemental strand, 5415763 - 5415715
Alignment:
425 aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaa 473  Q
    |||||| ||||||| ||||||||||||||||||| |||||||| |||||    
5415763 aacaatcaaaaatggaattatattaacaacaagattctcaataccacaa 5415715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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