View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8564_low_1 (Length: 683)
Name: NF8564_low_1
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8564_low_1 |
 |  |
|
| [»] scaffold0108 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 32772861 - 32772519
Alignment:
| Q |
18 |
aaatgctatcttcttgtgatactctttcaacttctactacttgttttgtttcttcttcaa---------------tgttgtaaccttgttctacttcttg |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32772861 |
aaatgctatctacttgtgatactctttcaacttctactacttgttttgtttcttcttcaacttgctccatttcaatgttgtaaccttgttctacttcttg |
32772762 |
T |
 |
| Q |
103 |
ttccacttcatgttccacatctacactatcctcatcttgtgcttgttctacatcttcaa------------------cttggtcttgttctttgtgaaga |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32772761 |
ttccacttcatgttccacatctacactatcctcatcttgtgcttgttctacatcttcaatttgatgatgttcttcaacttggtcttgttctttgtgaaga |
32772662 |
T |
 |
| Q |
185 |
ggtgattcccaaaaacggttagctaaagcagccattttaacaggatcagatctacacctcatcaacaaaagagcattctttggtggaacacaaatactaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32772661 |
ggtgattcccaaaaacggttagctaaagcagccattttaacaggatcagatctacacctcatcaacaaaagagcattctttggtggaacacaaatactaa |
32772562 |
T |
 |
| Q |
285 |
ctctacctttctcttcatcttcttctacttcaccaccaaactc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32772561 |
ctctacctttctcttcatcttcttctacttcaccaccaaactc |
32772519 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 10978660 - 10978435
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
10978660 |
aacaattaaaaatgggattatattaacaacaagagtctcaatagcacaagatgtgccacaaagactacttcaggattatgtacaacagcaaaaacaagtt |
10978561 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaa-aaaagaagtttttctagctttcaaccaacctaaagacaaatatt |
623 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10978560 |
agccaatactcaaacattgtaacgggtttgaccaccaactaaaaatatcaaacaaaaaaagaagcttttctagctttcaaccaacctaaagacaaatatt |
10978461 |
T |
 |
| Q |
624 |
ttactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
10978460 |
ttactttatcaagcaacctgggtaaa |
10978435 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 15017144 - 15017379
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact----------acttca-------gaattctgtac |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| || || ||| || |||| |
|
|
| T |
15017144 |
aacaataaaaaatggaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagtac |
15017243 |
T |
 |
| Q |
508 |
aacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaa |
607 |
Q |
| |
|
|||| | ||||||| | | |||||||||||||||||||| || |||||||||||||| |||| |||||| |||||| ||||||| ||||||||||| |
|
|
| T |
15017244 |
aacaacgaaaccaactcaaccaatacccaaacattgtaaagggcttgaccaccaactattagtgtcaaacataaaagagacttttctaactttcaaccaa |
15017343 |
T |
 |
| Q |
608 |
cctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
15017344 |
cctaaggacaaatattttactttgtcaagcaacctg |
15017379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 642
Target Start/End: Original strand, 5325232 - 5325461
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattct------------gtacaacag |
512 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| | |||| |||||||| |
|
|
| T |
5325232 |
aacaatcaaaaatgaaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtacaacaa |
5325331 |
T |
 |
| Q |
513 |
caaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaa |
612 |
Q |
| |
|
| ||||||| | |||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
5325332 |
cgaaaccaactcagccaatatccaaacattgtaaagggcttgaccaccaactattagtgccaaacataaaagagacttttctaactttcaaccaacctaa |
5325431 |
T |
 |
| Q |
613 |
agacaaatattttactttatcaagcaacct |
642 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |
|
|
| T |
5325432 |
ggacagatattttactttgtcaagcaacct |
5325461 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 504186 - 503962
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
504186 |
aacaatcaaaaatggaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaaatctgtacaacagcaaaaccaagtt |
504087 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
504086 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
503987 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
503986 |
tactttatcaagcaacctgggtaaa |
503962 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 8263731 - 8263949
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8263731 |
aacaataaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcaatattctgtacaacagcaaaaccaagtt |
8263830 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8263831 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaataaagaagcttttctagctttcaaccaacctaaagacaaatattt |
8263930 |
T |
 |
| Q |
625 |
tactttatcaagcaacctg |
643 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8263931 |
tactttatcaagcaacctg |
8263949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 19226999 - 19227223
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||| | ||||| |||||| |
|
|
| T |
19226999 |
aacaatcaaaaatggaattaaattaacaacaagagtctcaatagcacaagatgtgccacaaagactactacagagttcagtacaataacaaaaacaagtt |
19227098 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
19227099 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctagagacaaatattt |
19227198 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||| |||||||||||| ||||| |
|
|
| T |
19227199 |
aactttgtcaagcaacctgagtaaa |
19227223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 33639406 - 33639627
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||| ||||| |||||| |
|
|
| T |
33639406 |
aacaatcaaaaatgaaattatattaaca---agagtctcaatagcacaagatgtgtcacaaagactacttcagagttcagtacaacaacaaaaacaagtt |
33639502 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
33639503 |
agccgatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaaccaacctagggacaaatattt |
33639602 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||| |||||||||||| ||||| |
|
|
| T |
33639603 |
aactttgtcaagcaacctgggtaaa |
33639627 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 493 - 643
Target Start/End: Complemental strand, 5086610 - 5086460
Alignment:
| Q |
493 |
ttcagaattctgtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagttttt |
592 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||| || |||||||||| |||| |||||||||||||||||| | |||| |
|
|
| T |
5086610 |
ttcagaagtctgtacaacaacaaaaccaacttagccaatactcaaacattgtaaaggggttgaccaccatctaatagtgccaaacaaaaaagaggctttt |
5086511 |
T |
 |
| Q |
593 |
ctagctttcaaccaacctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| || ||||||||| |
|
|
| T |
5086510 |
ctagctttcaaccaacctaaggacgaatattttactttgtcgagcaacctg |
5086460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 33019450 - 33019684
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact----------------acttcagaattctgtaca |
508 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||| |||||||| | | |||| || |||| |
|
|
| T |
33019450 |
aacaataaaaaatgtaattatattaacaacaagagcctcattagcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtact |
33019549 |
T |
 |
| Q |
509 |
acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac |
608 |
Q |
| |
|
||| ||||||||| | |||||||||||||||||||||| || |||||||||||||| ||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
33019550 |
acaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaac |
33019649 |
T |
 |
| Q |
609 |
ctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33019650 |
ctaaagacaaatattttactttatcaagcaacctg |
33019684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 425 - 532
Target Start/End: Complemental strand, 15644281 - 15644174
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
15644281 |
aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaaaactacttcagaattcagtacaacaacaaaaccaagtt |
15644182 |
T |
 |
| Q |
525 |
agccaata |
532 |
Q |
| |
|
|||||||| |
|
|
| T |
15644181 |
agccaata |
15644174 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 5086694 - 5086631
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaaga |
488 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| ||||||||| | |||| |||||| |
|
|
| T |
5086694 |
aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaaggcatgcctcaaaga |
5086631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 232903 - 232960
Alignment:
| Q |
163 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
220 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
232903 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
232960 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 25923556 - 25923780
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25923556 |
aacaatcaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcaggattctgtacaacagcaaaaccaagtt |
25923655 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25923656 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagctttcagccaacctaaagacaaatattt |
25923755 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
25923756 |
tactttatcaagcaacctgggtaaa |
25923780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 34519259 - 34519035
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||| ||||| |||||| |
|
|
| T |
34519259 |
aacaatcaaaaatgaaataatattaacaacaagagtctcaatagcacaagatgtgccacaaagactactacagagttcagtacaacaacaaaaacaagtt |
34519160 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
34519159 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctagagacaaatattt |
34519060 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||| |||||||||||| ||||| |
|
|
| T |
34519059 |
aactttgtcaagcaacctgggtaaa |
34519035 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 45987534 - 45987759
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcaga-attctgtacaacagcaaaaccaagt |
523 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||| ||||| ||||| |
|
|
| T |
45987534 |
aacaatcaaaaatggaattatattaacaacaagagtctcaatagcacaagatgtgccacaaagactactacagagattcagtacaacaacaaaaacaagt |
45987633 |
T |
 |
| Q |
524 |
tagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatatt |
623 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
45987634 |
tagccaatacccaaacattataacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctagagacaaatatt |
45987733 |
T |
 |
| Q |
624 |
ttactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
| ||||| |||||||||||| ||||| |
|
|
| T |
45987734 |
taactttgtcaagcaacctgggtaaa |
45987759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 639
Target Start/End: Original strand, 17804434 - 17804645
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
17804434 |
aacaatcaaaaatgggattatattaaca---agagtctcaatagcacaagacgtgctacaaagactacttcaggattctgtacaacaacaaaatcaagtt |
17804530 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17804531 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagttttcaaccaacctaaagacaaatattt |
17804630 |
T |
 |
| Q |
625 |
tactttatcaagcaa |
639 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17804631 |
tactttatcaagcaa |
17804645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 504 - 640
Target Start/End: Original strand, 6970569 - 6970705
Alignment:
| Q |
504 |
gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaa |
603 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||||||||||||| || |||||||||||||| ||| ||||||| ||||||| ||||||| ||||||| |
|
|
| T |
6970569 |
gtacaacaacaaaatcaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagaaacttttctaactttcaa |
6970668 |
T |
 |
| Q |
604 |
ccaacctaaagacaaatattttactttatcaagcaac |
640 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
6970669 |
ccgacctaaagacaaatattttactttgtcaagcaac |
6970705 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 425 - 643
Target Start/End: Complemental strand, 21439580 - 21439346
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact---------acttca-------gaattctgtaca |
508 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||| || || ||| || ||||| |
|
|
| T |
21439580 |
aacaatcaaaaatgaaattatattaacaacaagagtctcattagcgcaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtaca |
21439481 |
T |
 |
| Q |
509 |
acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac |
608 |
Q |
| |
|
||| | ||||||| | |||||||||||||||||||||| || |||||||||||||| |||||||| || |||||| ||||||| |||||||||||| |
|
|
| T |
21439480 |
acaacgaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaagcataaaagagacttttctacctttcaaccaac |
21439381 |
T |
 |
| Q |
609 |
ctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| |
|
|
| T |
21439380 |
ctaaggacaaatattttactttgtcaagcaacctg |
21439346 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 27942051 - 27941944
Alignment:
| Q |
523 |
ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat |
622 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||| ||| ||| |||||| |||| || |||| |||||||||||||| |||||||||| ||| |
|
|
| T |
27942051 |
ttagccaatacccaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaatatagcttttttagctttcaaccaagctaaagacaagtat |
27941952 |
T |
 |
| Q |
623 |
tttacttt |
630 |
Q |
| |
|
|||||||| |
|
|
| T |
27941951 |
tttacttt |
27941944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 6970402 - 6970467
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact |
490 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||| |
|
|
| T |
6970402 |
aacaatcaaaaatgaaattatattaacaacaagagcctcgttagcacaaggcgtgcctcaaagact |
6970467 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 642
Target Start/End: Original strand, 7377313 - 7377432
Alignment:
| Q |
523 |
ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat |
622 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||| ||| ||| |||||| |||| | | ||| || |||||| ||||||||||||||| ||| |
|
|
| T |
7377313 |
ttagccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaaacgaaaatgtggcatttttaactttcagccaacctaaagacaagtat |
7377412 |
T |
 |
| Q |
623 |
tttactttatcaagcaacct |
642 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
7377413 |
tttactttgtccagcaacct |
7377432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 14053995 - 14054044
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaag |
474 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
14053995 |
aacaatcaaaaatggaattatattaacaataagagtctcaatagcacaag |
14054044 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 14364023 - 14364072
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaag |
474 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
14364023 |
aacaatcaaaaatggaattatattaacaataagagtctcaatagcacaag |
14364072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 39060299 - 39060192
Alignment:
| Q |
523 |
ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat |
622 |
Q |
| |
|
||||| |||||| |||||||| || || ||||||||||| ||| ||| |||||| |||| || |||| ||| |||||||||| |||||||||| ||| |
|
|
| T |
39060299 |
ttagctaatacctaaacattgaaaagggtttgaccaccacctatcagtaccaaacgaaaataaaacttttttagttttcaaccaagctaaagacaagtat |
39060200 |
T |
 |
| Q |
623 |
tttacttt |
630 |
Q |
| |
|
|||||||| |
|
|
| T |
39060199 |
tttacttt |
39060192 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 25505648 - 25505424
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25505648 |
aacaattaaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaagactacttcagaattctgtacaacaacaaaaccaagtt |
25505549 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25505548 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacttaaagacaaatattt |
25505449 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
25505448 |
tactttatcaagcaacctgggtaaa |
25505424 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 24314505 - 24314729
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
24314505 |
aacaatcaaaaatgaaattatattaacaacaggagtctcactagcacaagacgtgccacaaagactacttcagaattctatacaaccacaaaaccaagtt |
24314604 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24314605 |
agccaatacccaaacattgtaacgggtttgaccaccaactaatagtgccaaacaaaaaagaagtttttctagccttcaaccaacctaaagacaaatattt |
24314704 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
24314705 |
aactttatcaagcaacctgggtaaa |
24314729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 7178355 - 7178589
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact---------acttca-------gaattctgtaca |
508 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| || || ||| || ||||| |
|
|
| T |
7178355 |
aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtaca |
7178454 |
T |
 |
| Q |
509 |
acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac |
608 |
Q |
| |
|
||| | ||||||| | |||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
7178455 |
acaacgaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaaccaac |
7178554 |
T |
 |
| Q |
609 |
ctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7178555 |
ctaaagacagatattttactttgtcaagcaacctg |
7178589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 425 - 642
Target Start/End: Complemental strand, 34709590 - 34709353
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaaca----acaagagtctcaatagcacaagacgtgccacaaagact---------acttcag-----aat--tctg |
504 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||| |||| |
|
|
| T |
34709590 |
aacaatcaaaaatggaattatattaacagcacacaagagtctcaatagcacaagacgtgccacaaagactcctcaggaaacaacagtgtccaattgtctg |
34709491 |
T |
 |
| Q |
505 |
tacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaac |
604 |
Q |
| |
|
||| ||| ||||||||| |||| |||| |||| ||||||||| || ||||| |||| ||| ||||||||||||||||| || |||||||| || || | |
|
|
| T |
34709490 |
tacgacaacaaaaccaacttagtcaatgcccagacattgtaaagggcttgacaaccacctatcagtgccaaacaaaaaagtagcttttctagtttccagc |
34709391 |
T |
 |
| Q |
605 |
caacctaaagacaaatattttactttatcaagcaacct |
642 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |
|
|
| T |
34709390 |
caacctaaagacaaatattttactttgtcgagcaacct |
34709353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 642
Target Start/End: Original strand, 43810394 - 43810512
Alignment:
| Q |
524 |
tagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatatt |
623 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||| ||| ||| |||| | |||| | | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
43810394 |
tagccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaagcgaaaatgtaacttttctagctttcaaccaacctaaagacaagtatt |
43810493 |
T |
 |
| Q |
624 |
ttactttatcaagcaacct |
642 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
43810494 |
ttactttatccaacaacct |
43810512 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 7472893 - 7473116
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
7472893 |
aacaataaaaaatggaattatattaataacaagagtctcaatagcacaagacgtgccataaatactacttcagaattttgtacaac-gcaaaaccaagtt |
7472991 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472992 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcttttctagctttcaaccaacctaaagacaaatattt |
7473091 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
7473092 |
tactttatcaagcaacctgggtaaa |
7473116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 8934587 - 8934811
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8934587 |
aacaatcaaaaatggaattatattaacaacaatagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacaacaaaaccaagtt |
8934686 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
8934687 |
agccaatacccaaacattataacgggtttgaccaccaactaaaagttccaaacaaaaaagaagcttttctagctttcaaccaacctaaagacaaatagtt |
8934786 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
8934787 |
tactttatcaagcaacctgggtaaa |
8934811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 19644476 - 19644700
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
19644476 |
aacaatcaaaaatggaattatattaacaacaagagtctcaatagcacaagatgtgccacaaagactacttcagaattcagtacaacaacaaaaacaagtt |
19644575 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19644576 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaaatgccaaacaaaaaagaagcgtttctagctttcaaccaacctaaagacaaatattt |
19644675 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
19644676 |
tactttgtcaagcaacctgggtaaa |
19644700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 432 - 649
Target Start/End: Complemental strand, 33988416 - 33988199
Alignment:
| Q |
432 |
aaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagttagccaat |
531 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
33988416 |
aaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaagactacttcagaattcagtacaacaacaaaaccaagttagccaat |
33988317 |
T |
 |
| Q |
532 |
acccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattttacttta |
631 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33988316 |
acccaaacattgtaacgggtttgaccaccaattaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctaaagataaatattttactttg |
33988217 |
T |
 |
| Q |
632 |
tcaagcaacctgtgtaaa |
649 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
33988216 |
tcaagcaacctgggtaaa |
33988199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 625
Target Start/End: Original strand, 23118921 - 23119121
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
23118921 |
aacaatcaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccaccaagactacttcaaaattctgtacaacaacaaaaccaagct |
23119020 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23119021 |
agccaatacccagacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaaaaagtttttctagctttcaaccaacctaaagacaaatattt |
23119120 |
T |
 |
| Q |
625 |
t |
625 |
Q |
| |
|
| |
|
|
| T |
23119121 |
t |
23119121 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 425 - 570
Target Start/End: Original strand, 23657158 - 23657303
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
23657158 |
aacaattaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgccaccaagactacttcagaattctgtacaacaacaaaaccaagct |
23657257 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagt |
570 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
23657258 |
agccaatacctagacattgtaacgggtttgaccaccaactaaaagt |
23657303 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 425 - 516
Target Start/End: Complemental strand, 49926594 - 49926503
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaa |
516 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
49926594 |
aacaataaaaaatagaattatattaacaacaagagtctcattagcacaagacgtgccacaaagattacttcagaattctgtacaacaacaaa |
49926503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 433 - 643
Target Start/End: Complemental strand, 48031804 - 48031579
Alignment:
| Q |
433 |
aaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactact----------------tcagaattctgtacaacagcaaa |
516 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| | | | ||||||| |||| |
|
|
| T |
48031804 |
aaaatggaattatattaacaacaagagtctcaatagcacaaggcgtgccacaaagactagtcaagaaacagcaaagttcaggagtatctacaacaacaaa |
48031705 |
T |
 |
| Q |
517 |
accaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagac |
616 |
Q |
| |
|
||||| |||||||||||||| | ||||||| || || | |||||| ||| ||||||||| ||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
48031704 |
accaacttagccaatacccagaaattgtaaaggctt-gcccaccatctattagtgccaaataaaaaagtaacttttctagcttttaaccaacctaaagac |
48031606 |
T |
 |
| Q |
617 |
aaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
|||||||||||||| || || |||||| |
|
|
| T |
48031605 |
aaatattttactttgtcgagtaacctg |
48031579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 19114021 - 19114139
Alignment:
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||| |||||||||||| || |||| ||||||||| ||||||||||| |||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19114021 |
agccaatactcaaacattgtaaagggcttgatcaccaactatgagtgccaaacataaaatagacttttctagctttcaaccaacctaaggacaaatattt |
19114120 |
T |
 |
| Q |
625 |
tactttatcaagcaacctg |
643 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
19114121 |
tactttgtcaagcaacctg |
19114139 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 30310034 - 30310149
Alignment:
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||| | |||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30310034 |
agccaatatccaaacattgtaaagggtttgaccaccaatga---gtgccaaacataaaagagacttttctagctttcaaccaacctaaggacaaatattt |
30310130 |
T |
 |
| Q |
625 |
tactttatcaagcaacctg |
643 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
30310131 |
tactttgtcaagcaacctg |
30310149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 29554297 - 29554190
Alignment:
| Q |
523 |
ttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatat |
622 |
Q |
| |
|
||||||||||| ||||||||| || || |||||||||| ||| ||| |||||| |||| ||| |||| |||||||||||||| |||||||||| ||| |
|
|
| T |
29554297 |
ttagccaatactcaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaataaagcttttttagctttcaaccaagctaaagacaagtat |
29554198 |
T |
 |
| Q |
623 |
tttacttt |
630 |
Q |
| |
|
|||||||| |
|
|
| T |
29554197 |
tttacttt |
29554190 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 30309917 - 30309982
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact |
490 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
30309917 |
aacaatcaaaaatggaattatattaacaacaagagtctcgttagcacaaggcgtgcctcaaagact |
30309982 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 19113904 - 19113969
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact |
490 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||| ||||||||| | |||| |||||||| |
|
|
| T |
19113904 |
aacaatcaaaaatggaattatattaacaacaagagtgtcattagcacaaggcatgcctcaaagact |
19113969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 3861223 - 3861268
Alignment:
| Q |
588 |
tttttctagctttcaaccaacctaaagacaaatattttactttatc |
633 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3861223 |
tttttttagctttcatccagcctaaagacaaatattttactttatc |
3861268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 3869980 - 3870025
Alignment:
| Q |
588 |
tttttctagctttcaaccaacctaaagacaaatattttactttatc |
633 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3869980 |
tttttttagctttcatccagcctaaagacaaatattttactttatc |
3870025 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 25875201 - 25875152
Alignment:
| Q |
569 |
gtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaa |
618 |
Q |
| |
|
|||||||| | ||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
25875201 |
gtgccaaaaacaaaggtagtttttttagctttcaaccaacctaaagacaa |
25875152 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 10394 - 10618
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
10394 |
aacaatcaaaaatggaattatattaacaacaagagtctcattagcacaagacgtgctacaaagactacttcagaattcagcacaacaacaaaaccaagtt |
10493 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10494 |
agccaatacccaaacattgtaacgggtttaaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaaccaacctaaagacaaatattt |
10593 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
10594 |
tactttgtcaagcaacctgggtaaa |
10618 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 425 - 649
Target Start/End: Complemental strand, 4988720 - 4988496
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||| | ||||| |||||| |
|
|
| T |
4988720 |
aacaatcaaaaatagaattatattaccaacaagagtctcaatagcacaagatgtgccataaagactacatcagaattcagtacaataacaaaaacaagtt |
4988621 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4988620 |
agccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaaccaacctaaagacaaatattt |
4988521 |
T |
 |
| Q |
625 |
tactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
4988520 |
tactttgtcaagcaacctgggtaaa |
4988496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 425 - 639
Target Start/End: Complemental strand, 36319145 - 36318931
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactacttcagaattctgtacaacagcaaaaccaagtt |
524 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
36319145 |
aacaatcaaaaatgggattatattaacaacaagagtctcaatagcacaagatgtgtcataaagactacttcaggattctctacaacagcaaaaccaagtt |
36319046 |
T |
 |
| Q |
525 |
agccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatattt |
624 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
36319045 |
agccaatacctaaacattgtaaagggtttgaccaccaactaaaactaccaaacaaaaaagaaacttttctagctttcagccaacctaaagataaatattt |
36318946 |
T |
 |
| Q |
625 |
tactttatcaagcaa |
639 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36318945 |
tactttatcaagcaa |
36318931 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 13909097 - 13909162
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact |
490 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || | ||||||||| |||||| |||||||| |
|
|
| T |
13909097 |
aacaatcaaaaatgaaattatattaacaacaagagccttattagcacaaggcgtgcctcaaagact |
13909162 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 578
Target Start/End: Original strand, 13909192 - 13909266
Alignment:
| Q |
504 |
gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaaca |
578 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
13909192 |
gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaaca |
13909266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 28419529 - 28419586
Alignment:
| Q |
163 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
220 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
28419529 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
28419586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 425 - 643
Target Start/End: Original strand, 51144534 - 51144768
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagactact----------------tcagaattctgtaca |
508 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||| |||||| || |||| | ||| |||| |
|
|
| T |
51144534 |
aacaataaaaaatggaattatataaacaaccagagtctcattagcacaagacgtgccaccaagactcctcaagaaacaacaaagttcagtagtctttaca |
51144633 |
T |
 |
| Q |
509 |
acagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaac |
608 |
Q |
| |
|
||| ||||||||| |||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51144634 |
acaacaaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgccaaacaaaaaagtagtttttctagctttcaaccaac |
51144733 |
T |
 |
| Q |
609 |
ctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |
|
|
| T |
51144734 |
ctaaagacaaatattttactttgccgagcaacctg |
51144768 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 504 - 643
Target Start/End: Complemental strand, 20894330 - 20894191
Alignment:
| Q |
504 |
gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaa |
603 |
Q |
| |
|
|||||||| | |||||| | |||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| ||||||||||||||| |
|
|
| T |
20894330 |
gtacaacaacgaaaccatctcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaa |
20894231 |
T |
 |
| Q |
604 |
ccaacctaaagacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
||||| ||| || | |||||||||||| |||||||||||| |
|
|
| T |
20894230 |
ccaacttaaggatagatattttactttgtcaagcaacctg |
20894191 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 524 - 633
Target Start/End: Complemental strand, 54558985 - 54558876
Alignment:
| Q |
524 |
tagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaaagacaaatatt |
623 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||| ||| ||| || ||| |||| | | |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
54558985 |
tagccaatacccaaacattggaaagggcttgaccaccacctatcagtacctaacgaaaatgtaacttttttagctttcaaccaacttaaagacaaatatt |
54558886 |
T |
 |
| Q |
624 |
ttactttatc |
633 |
Q |
| |
|
|||||||||| |
|
|
| T |
54558885 |
ttactttatc |
54558876 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 20894425 - 20894360
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact |
490 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| ||||| ||| |||||| |||||||| |
|
|
| T |
20894425 |
aacaattaaaaatggaattatattaacaacaagagtctcattagcataaggcgtgcctcaaagact |
20894360 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 50810155 - 50810212
Alignment:
| Q |
163 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
220 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
50810155 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
50810212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 50865707 - 50865650
Alignment:
| Q |
163 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
220 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
50865707 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
50865650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 513 - 643
Target Start/End: Complemental strand, 22095817 - 22095687
Alignment:
| Q |
513 |
caaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaacaaaaaagaagtttttctagctttcaaccaacctaa |
612 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| || |||||||||||||| |||| ||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
22095817 |
caaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgtcaaacaaaagagtagcttttctagctttcaaccaacctaa |
22095718 |
T |
 |
| Q |
613 |
agacaaatattttactttatcaagcaacctg |
643 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |
|
|
| T |
22095717 |
agacaaatattttactttgtcgagcaacctg |
22095687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 513 - 577
Target Start/End: Complemental strand, 5415714 - 5415650
Alignment:
| Q |
513 |
caaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaac |
577 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5415714 |
caaaacaaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaac |
5415650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 636
Target Start/End: Complemental strand, 11575268 - 11575137
Alignment:
| Q |
504 |
gtacaacagcaaaaccaagttagccaatacccaaacattgtaacggatttgaccaccaactaaaagtgccaaaca-aaaaagaagtttttctagctttca |
602 |
Q |
| |
|
|||||||| | | ||||| | |||||||||||||||||||||| || |||||||||||||| ||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
11575268 |
gtacaacaacgacaccaactaagccaatacccaaacattgtaaagggcttgaccaccaactatgagtgccaaacataaataga--cttttctagctttca |
11575171 |
T |
 |
| Q |
603 |
accaacctaaagacaaatattttactttatcaag |
636 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
11575170 |
accaatctaaggacaaatattttactttgtcaag |
11575137 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 649
Target Start/End: Complemental strand, 5415622 - 5415576
Alignment:
| Q |
603 |
accaacctaaagacaaatattttactttatcaagcaacctgtgtaaa |
649 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5415622 |
accaacctaaacacaaatattttactttatcaagcaacctgggtaaa |
5415576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 11575356 - 11575299
Alignment:
| Q |
433 |
aaaatgaaattatattaacaacaagagtctcaatagcacaagacgtgccacaaagact |
490 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| |||||| |||| ||| |
|
|
| T |
11575356 |
aaaatggaattatattaacaacaagagtctcattagcacaaagcgtgcctcaaatact |
11575299 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 473
Target Start/End: Complemental strand, 5415763 - 5415715
Alignment:
| Q |
425 |
aacaataaaaaatgaaattatattaacaacaagagtctcaatagcacaa |
473 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5415763 |
aacaatcaaaaatggaattatattaacaacaagattctcaataccacaa |
5415715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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