View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8564_low_3 (Length: 388)
Name: NF8564_low_3
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8564_low_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 29296306 - 29295938
Alignment:
| Q |
20 |
cgccacaagcctccctccgtaatccattcccatcggaactactaccaccaacacgcgacttcttagaagaaaggccacacaaaagaagacgcattaaaca |
119 |
Q |
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| T |
29296306 |
cgccacaagcctccctccgtaatccattcccatcggaactactaccaccaacacgcgacttcttagaagaaagaccacacaaaagaagacgcattaaaca |
29296207 |
T |
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| Q |
120 |
atcccaaaagaaatcactcatcaacaacttcgaacttcaaccacacgtcacaaagattctccgatccaacgacttctcttctcttctcgaaacaatccaa |
219 |
Q |
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| T |
29296206 |
atcccaaaagaaatcactcatcaacaacttcgaacttcaaccacatgtcacaaagattctccgatccaacgacttctcttctcttctcgaaacaatccaa |
29296107 |
T |
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| Q |
220 |
atcttcatccaatccaaggatccttcattccaaaccgttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctag |
319 |
Q |
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| T |
29296106 |
atcttcatccaatccaaggatccttcattccaaaccgttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctag |
29296007 |
T |
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| Q |
320 |
aaactcaccctaaactcgagatccgaaacgaagctgtttcgattcttcttcacattttcaaaaaatctg |
388 |
Q |
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| T |
29296006 |
aaactcaccctaaactcgagatccgaaacgaagctgtttcgattcttcttcacattttcaaaaaatctg |
29295938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 29333519 - 29333455
Alignment:
| Q |
257 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
321 |
Q |
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| T |
29333519 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
29333455 |
T |
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