View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8564_low_5 (Length: 377)
Name: NF8564_low_5
Description: NF8564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8564_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 42686727 - 42687077
Alignment:
| Q |
18 |
atgagatgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686727 |
atgagatgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaac |
42686826 |
T |
|
| Q |
118 |
cattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggtacttgacatcaatatatttagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686827 |
cattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggtacttgacatcaatatatttagt |
42686926 |
T |
|
| Q |
218 |
gcatgttttgtagtacggtaggtttatcacagtcatagtgagctaccgtgatattagcaatcaacggtgatactaaacatgcacttattttcatatcaag |
317 |
Q |
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| T |
42686927 |
gcatgttttgtagtacggtaggtttatcacagtcatagtgagctaccgtgatattagcaatcaactgtgatactaaacatgcacttattttcatatcaag |
42687026 |
T |
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| Q |
318 |
tatattttaccaaagtaaccattatttttaaacgaactttctaatgatgtc |
368 |
Q |
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| T |
42687027 |
tatattttaccaaagtaaccattatttttaaacgaactttctaatgatgtc |
42687077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 42694872 - 42694694
Alignment:
| Q |
18 |
atgagatgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaac |
117 |
Q |
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| T |
42694872 |
atgacatgggaattcctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaag |
42694773 |
T |
|
| Q |
118 |
cattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggta |
196 |
Q |
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||| |||||||||||||| ||| |||| || || |||| ||||| | ||||||||||||||||| |||||| |
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| T |
42694772 |
catctactttgtatgcaactcctggatttataatgccaaacaccacaaacttgaccgcattttctttgccaataaggta |
42694694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 6364824 - 6364717
Alignment:
| Q |
89 |
actcttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgcca |
188 |
Q |
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| T |
6364824 |
actcttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgcca |
6364725 |
T |
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| Q |
189 |
acaaggta |
196 |
Q |
| |
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|||||||| |
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|
| T |
6364724 |
acaaggta |
6364717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 6425611 - 6425553
Alignment:
| Q |
92 |
cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaa |
150 |
Q |
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| T |
6425611 |
cttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcttgggtttacaa |
6425553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 6290831 - 6290727
Alignment:
| Q |
92 |
cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaaca |
191 |
Q |
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|||||||||||||| |||||||||||||| ||||| |||||||| ||| ||||||| || || ||||||| | |||||| ||||||||||||| |
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| T |
6290831 |
cttgaagatgttcccaaccatggaaccatcaactttgtttgcaactcatggatttacaatgctcaaaactacaaaactgaacgcatcttctttgccaaca |
6290732 |
T |
|
| Q |
192 |
aggta |
196 |
Q |
| |
|
||||| |
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|
| T |
6290731 |
aggta |
6290727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 6354135 - 6354008
Alignment:
| Q |
23 |
atgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaaccattc |
122 |
Q |
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||||||||||| || || ||||||||| | |||| |||||||| ||| || | || |||| | || |||||||||||||||||||||||| |||| | |
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| T |
6354135 |
atgggaattcccggagctttttacatcgataattttatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaaccatggatccatcc |
6354036 |
T |
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| Q |
123 |
gatttgtatgcaactcttgggtttacaa |
150 |
Q |
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||||| |||||||| ||| ||||||| |
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| T |
6354035 |
actttgtctgcaactcatggatttacaa |
6354008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 6323058 - 6323001
Alignment:
| Q |
92 |
cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttaca |
149 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
6323058 |
cttgaagatattccaaaccatggaaccatcaactttgtatgcaactcatggatttaca |
6323001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 7461076 - 7461048
Alignment:
| Q |
92 |
cttgaagatgttccaaaccatggaaccat |
120 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7461076 |
cttgaagatgttccaaaccatggaaccat |
7461048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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