View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_high_1 (Length: 536)
Name: NF8565_high_1
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 53 - 527
Target Start/End: Original strand, 1411933 - 1412402
Alignment:
| Q |
53 |
atataactaccgttctctaaaaactaattcgagggtttgtctaagataaatcatcaaatatattttatccacttgaaactatagatatttatccttaaaa |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1411933 |
atataactaccgttctctaaaaactaattcgagggtttgtctaggataaatcaccaaatatattttatccacttgaaactatagatatttatccttaaaa |
1412032 |
T |
|
| Q |
153 |
taactaatgacaatcacctaaagttgttaaaatggacgggcctaccaagccggaccgagcaagcccgaaaaataaagggcttggacaacaaaattttagc |
252 |
Q |
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| T |
1412033 |
taactaatgacaatcacctagagttgttaaaatggacggatctaccgagccggaccgagaaagctcgaaaaataaagggtttggacaacaaaattttagt |
1412132 |
T |
|
| Q |
253 |
ccggttagtacgagggatttttagcccaagcccgtggcgggatagcccggccgggctccgggtagcttgaaagcccgattatttttatgaataacaaatc |
352 |
Q |
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||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||| |||||| |||| |
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| T |
1412133 |
ccgattagtacgagggatttttaacccgagcccgtggcgggatagcccggccgggccc---atagctcgaaagcccgattatttctatcaataactaatc |
1412229 |
T |
|
| Q |
353 |
aattttgtttattacccactccactattttgttttgtcttaagtattattcataacctttatttttatgcaaatctattaagtattcggtagtaccattc |
452 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1412230 |
aattttttttattacccactccactattttgttttgtcttaagtattattcataacctttatttttatgcaaatctattaagtat--ggtagtaccattc |
1412327 |
T |
|
| Q |
453 |
tatttaatttcgattgctcctaatatagttttatcattctatttcaaattaaaatcctttattgccaagtataat |
527 |
Q |
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| T |
1412328 |
tatttaatttcgattgctcctaatatcgttttatcattctatttcaaattaaaatcctttattgccaagtgtaat |
1412402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 8960665 - 8960606
Alignment:
| Q |
220 |
aaaaataaagggcttggacaacaaaattttagcccggttagtacgagggatttttagccc |
279 |
Q |
| |
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|||||| ||||||||||| |||||||||| |||||| |||||||| || |||||||||| |
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|
| T |
8960665 |
aaaaatgaagggcttggataacaaaatttgagcccgaatagtacgaaggctttttagccc |
8960606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 15975542 - 15975666
Alignment:
| Q |
275 |
agcccaagcccgtggcgggatagcccggccgggctccgggtagcttgaaagcccgattatttttatgaataacaaatcaattttgttt----attaccca |
370 |
Q |
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| T |
15975542 |
agccctagcccgtggcgggctagcccgaccgggctccaggtagcccaaaagcccgactatttttattaatcactaatcaatttttttttgtaattcccca |
15975641 |
T |
|
| Q |
371 |
ctccactattttgttttgtcttaag |
395 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
15975642 |
ctccactgttttgttttgtcttaag |
15975666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 15975432 - 15975530
Alignment:
| Q |
181 |
aaaatggacgggcctaccaagccggaccgagcaagcccgaaaaataaagggcttggacaacaaaattttagcccggttagtacgagggatttttagccc |
279 |
Q |
| |
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||||||| ||||||||||| ||| |||| | || ||| |||||| ||||| |||||||||||||||| |||||| |||| |||||| |||||||||| |
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| T |
15975432 |
aaaatgggcgggcctaccaggccagaccaggaaaacccaaaaaatgaagggtttggacaacaaaatttgagcccgaatagtccgagggctttttagccc |
15975530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 17888973 - 17889020
Alignment:
| Q |
271 |
ttttagcccaagcccgtggcgggatagcccggccgggctccgggtagc |
318 |
Q |
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| T |
17888973 |
ttttagcccgagcccgtggcgggctagcccgaccgagctccgggtagc |
17889020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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