View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8565_high_10 (Length: 240)

Name: NF8565_high_10
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8565_high_10
NF8565_high_10
[»] chr8 (2 HSPs)
chr8 (1-133)||(1412374-1412506)
chr8 (180-229)||(1412499-1412548)
[»] chr5 (2 HSPs)
chr5 (142-172)||(12378554-12378584)
chr5 (142-172)||(41197302-41197332)
[»] chr4 (1 HSPs)
chr4 (142-172)||(43989204-43989234)
[»] chr3 (2 HSPs)
chr3 (142-172)||(36685040-36685070)
chr3 (142-172)||(51976895-51976925)
[»] chr1 (1 HSPs)
chr1 (142-172)||(11351543-11351573)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 1412374 - 1412506
Alignment:
Q  1 aattaaaatcctttattgccaagtgtaattgctgctgccatgttatttccaattgaattccaccactttgctgttactgtgcatgttcaattgtttggga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  1412374 aattaaaatcctttattgccaagtgtaattgctgctgccatgttatttccaattaaattccaccactttgctgatagtgtgcatgttcaattgtttggga 1412473  T
Q  101 attatcattattattataccatggctgtagctg 133  Q
    ||||||||||||||||| |||||||||||||||    
T  1412474 attatcattattattatgccatggctgtagctg 1412506  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 1412499 - 1412548
Alignment:
Q  180 tgtagctgttctttcttatccatttaatgtttccaacttatcacaggttc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1412499 tgtagctgttctttcttatccatttaatgtttccaacttatcacaggttc 1412548  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 12378554 - 12378584
Alignment:
Q  142 aaggaaaaaattcattgcttttcattagcta 172  Q
    |||||||||||||||||||||||||||||||    
T  12378554 aaggaaaaaattcattgcttttcattagcta 12378584  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 41197302 - 41197332
Alignment:
Q  142 aaggaaaaaattcattgcttttcattagcta 172  Q
    |||||||||||||||||||||||||||||||    
T  41197302 aaggaaaaaattcattgcttttcattagcta 41197332  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 43989204 - 43989234
Alignment:
Q  142 aaggaaaaaattcattgcttttcattagcta 172  Q
    |||||||||||||||||||||||||||||||    
T  43989204 aaggaaaaaattcattgcttttcattagcta 43989234  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Complemental strand, 36685070 - 36685040
Alignment:
Q  142 aaggaaaaaattcattgcttttcattagcta 172  Q
    |||||||||||||||||||||||||||||||    
T  36685070 aaggaaaaaattcattgcttttcattagcta 36685040  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Complemental strand, 51976925 - 51976895
Alignment:
Q  142 aaggaaaaaattcattgcttttcattagcta 172  Q
    |||||||||||||||||||||||||||||||    
T  51976925 aaggaaaaaattcattgcttttcattagcta 51976895  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 11351543 - 11351573
Alignment:
Q  142 aaggaaaaaattcattgcttttcattagcta 172  Q
    |||||||||||||||||||||||||||||||    
T  11351543 aaggaaaaaattcattgcttttcattagcta 11351573  T

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