View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8565_high_11 (Length: 240)

Name: NF8565_high_11
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8565_high_11
NF8565_high_11
[»] chr3 (8 HSPs)
chr3 (102-186)||(34649728-34649812)
chr3 (1-51)||(34651497-34651547)
chr3 (190-226)||(2134945-2134981)
chr3 (191-231)||(42636557-42636597)
chr3 (190-231)||(21221529-21221570)
chr3 (190-231)||(29584750-29584791)
chr3 (190-226)||(40083196-40083232)
chr3 (190-226)||(47958606-47958642)
[»] chr2 (9 HSPs)
chr2 (190-232)||(37004043-37004085)
chr2 (190-232)||(30798661-30798703)
chr2 (190-231)||(2085946-2085987)
chr2 (190-231)||(4641390-4641431)
chr2 (190-231)||(9717115-9717156)
chr2 (190-231)||(18685710-18685751)
chr2 (190-231)||(35114659-35114700)
chr2 (190-231)||(44284511-44284552)
chr2 (190-226)||(33366484-33366520)
[»] chr4 (10 HSPs)
chr4 (190-231)||(43640976-43641017)
chr4 (190-232)||(49152266-49152308)
chr4 (190-231)||(12600763-12600804)
chr4 (190-231)||(23521757-23521798)
chr4 (190-231)||(24002215-24002256)
chr4 (190-231)||(33552995-33553036)
chr4 (190-231)||(36885823-36885864)
chr4 (190-231)||(42869859-42869900)
chr4 (190-226)||(2725290-2725326)
chr4 (193-229)||(28115157-28115193)
[»] chr1 (8 HSPs)
chr1 (190-231)||(44738291-44738332)
chr1 (190-232)||(39281778-39281820)
chr1 (190-231)||(844974-845015)
chr1 (190-231)||(26118450-26118491)
chr1 (190-231)||(26765039-26765080)
chr1 (190-231)||(30105915-30105956)
chr1 (190-231)||(41972795-41972836)
chr1 (190-231)||(42510408-42510449)
[»] scaffold0208 (1 HSPs)
scaffold0208 (190-231)||(2519-2560)
[»] scaffold0098 (1 HSPs)
scaffold0098 (190-231)||(51313-51354)
[»] chr8 (7 HSPs)
chr8 (190-231)||(4052371-4052412)
chr8 (190-231)||(14005219-14005260)
chr8 (190-231)||(27103833-27103874)
chr8 (190-231)||(32020191-32020232)
chr8 (190-231)||(32303775-32303816)
chr8 (190-231)||(35225537-35225578)
chr8 (190-231)||(37861770-37861811)
[»] chr7 (3 HSPs)
chr7 (190-231)||(3922879-3922920)
chr7 (190-231)||(32873945-32873986)
chr7 (191-231)||(18470563-18470603)
[»] chr6 (2 HSPs)
chr6 (190-231)||(15277151-15277192)
chr6 (191-231)||(4494312-4494352)
[»] chr5 (7 HSPs)
chr5 (190-231)||(2351554-2351595)
chr5 (190-231)||(4818321-4818362)
chr5 (190-223)||(7725997-7726030)
chr5 (190-231)||(31880242-31880283)
chr5 (190-231)||(35701151-35701192)
chr5 (190-226)||(6284485-6284521)
chr5 (191-231)||(11963216-11963256)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 34649812 - 34649728
Alignment:
Q  102 tagatcagtcgagttcaaaccccaatcacatatttattctaacaattttaatattttatcaattgagtaaccagttgtggactaa 186  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34649812 tagatgagtcgagttcaaaccccaatcacatatttattctaacaattttaatattttatcaattgagtaatcagttgtggactaa 34649728  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34651547 - 34651497
Alignment:
Q  1 caaggtaaaaaatatgagattttataataaagaaaagatagatttaaaata 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34651547 caaggtaaaaaatatgagattttataataaagaaaagatagatttaaaata 34651497  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 2134945 - 2134981
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaa 226  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2134945 tgtgtttggtttgcaaaacagcaagtactagacagaa 2134981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 42636597 - 42636557
Alignment:
Q  191 gtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  42636597 gtgtttggtttgcaaaacaacaagtactagacagaatagta 42636557  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 21221570 - 21221529
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  21221570 tgtgtttggtttgcaatacagcaagtactagacagaacagta 21221529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 29584750 - 29584791
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  29584750 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 29584791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 40083196 - 40083232
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaa 226  Q
    ||||||||  |||||||||||||||||||||||||||    
T  40083196 tgtgtttggcttgcaaaacagcaagtactagacagaa 40083232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 47958642 - 47958606
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaa 226  Q
    |||||||| |||||||||||||||||||| |||||||    
T  47958642 tgtgtttggtttgcaaaacagcaagtactggacagaa 47958606  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 37004085 - 37004043
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagtat 232  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  37004085 tgtgtttggtttgcaaaacagcaagtactagacagaacagtat 37004043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 30798703 - 30798661
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagtat 232  Q
    |||||||| |||||||||||||||||||| ||||||| |||||    
T  30798703 tgtgtttggtttgcaaaacagcaagtactggacagaacagtat 30798661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 2085946 - 2085987
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2085946 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 2085987  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 4641390 - 4641431
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  4641390 tgtgtttgctttgcaaaacagcaagtactggacagaacagta 4641431  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 9717115 - 9717156
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  9717115 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 9717156  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 18685710 - 18685751
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  18685710 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 18685751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 35114659 - 35114700
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  35114659 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 35114700  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 44284511 - 44284552
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  44284511 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 44284552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 33366484 - 33366520
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaa 226  Q
    |||||||| |||||||||||||||||||| |||||||    
T  33366484 tgtgtttggtttgcaaaacagcaagtactggacagaa 33366520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 43640976 - 43641017
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  43640976 tgtgtttggtttgcaaaacagcaagtactagacagaacagta 43641017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 49152308 - 49152266
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagtat 232  Q
    |||||||| |||||||||||||||||||| ||||||| |||||    
T  49152308 tgtgtttggtttgcaaaacagcaagtactggacagaacagtat 49152266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 12600763 - 12600804
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  12600763 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 12600804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 23521757 - 23521798
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  23521757 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 23521798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 24002215 - 24002256
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  24002215 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 24002256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 33553036 - 33552995
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  33553036 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 33552995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 36885823 - 36885864
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| ||||||||||||| |||||||||||||| ||||    
T  36885823 tgtgtttggtttgcaaaacagcgagtactagacagaacagta 36885864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 42869859 - 42869900
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  42869859 tgtgtttggtttgcaaaacagcaagtactcgacagaacagta 42869900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 2725326 - 2725290
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaa 226  Q
    |||||||| |||||||||||||||||||| |||||||    
T  2725326 tgtgtttggtttgcaaaacagcaagtactggacagaa 2725290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 28115157 - 28115193
Alignment:
Q  193 gtttgatttgcaaaacagcaagtactagacagaatag 229  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  28115157 gtttggtttgcaaaacagtaagtactagacagaatag 28115193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 44738332 - 44738291
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  44738332 tgtgtttggtttgcaaaacagcaagtactagacagaacagta 44738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 39281778 - 39281820
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagtat 232  Q
    |||||||| |||||||||||| ||||||| |||||||||||||    
T  39281778 tgtgtttggtttgcaaaacagtaagtactggacagaatagtat 39281820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 845015 - 844974
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  845015 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 844974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 26118491 - 26118450
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  26118491 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 26118450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 26765080 - 26765039
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  26765080 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 26765039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 30105956 - 30105915
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  30105956 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 30105915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 41972795 - 41972836
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  41972795 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 41972836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 42510408 - 42510449
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  42510408 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 42510449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 2560 - 2519
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2560 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 2519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 51313 - 51354
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  51313 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 51354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 4052371 - 4052412
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  4052371 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 4052412  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 14005260 - 14005219
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  14005260 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 14005219  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 27103833 - 27103874
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||||||||||||||| |||||||| ||||||| ||||    
T  27103833 tgtgtttgatttgcaaaacaacaagtactggacagaacagta 27103874  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 32020232 - 32020191
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  32020232 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 32020191  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 32303816 - 32303775
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  32303816 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 32303775  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 35225537 - 35225578
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||| ||||||| ||||||||||||    
T  35225537 tgtgtttggtttgcaaaacagtaagtactggacagaatagta 35225578  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 37861770 - 37861811
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  37861770 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 37861811  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 3922920 - 3922879
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  3922920 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 3922879  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 32873986 - 32873945
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  32873986 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 32873945  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 18470563 - 18470603
Alignment:
Q  191 gtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  18470563 gtgtttggtttgcaaaacagcaagtactggacagaacagta 18470603  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 15277192 - 15277151
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  15277192 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 15277151  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 4494352 - 4494312
Alignment:
Q  191 gtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  4494352 gtgtttggtttgcaaaacagtaagtactagacagaacagta 4494312  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 2351554 - 2351595
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2351554 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 2351595  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 4818362 - 4818321
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  4818362 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 4818321  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 7726030 - 7725997
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagaca 223  Q
    ||||||||||||||||||||| ||||||||||||    
T  7726030 tgtgtttgatttgcaaaacagtaagtactagaca 7725997  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 31880283 - 31880242
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  31880283 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 31880242  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 35701151 - 35701192
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  35701151 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 35701192  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 6284521 - 6284485
Alignment:
Q  190 tgtgtttgatttgcaaaacagcaagtactagacagaa 226  Q
    |||||||||||| |||||||||||||||| |||||||    
T  6284521 tgtgtttgatttacaaaacagcaagtactggacagaa 6284485  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 11963216 - 11963256
Alignment:
Q  191 gtgtttgatttgcaaaacagcaagtactagacagaatagta 231  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  11963216 gtgtttggtttgcaaaacagcaagtactggacagaacagta 11963256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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