View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_high_4 (Length: 294)
Name: NF8565_high_4
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 28402411 - 28402145
Alignment:
| Q |
18 |
gttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattcttcaacaattcatgaacacttaaaagattttcagaaatttgagga |
117 |
Q |
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| T |
28402411 |
gttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattcttcaacaattcaggaacacttaagagattttcagaaatttgagga |
28402312 |
T |
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| Q |
118 |
acatatataaaacattcaaaactagtttcgaacctgagtaattcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactct |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28402311 |
acatata--aaacattcaaaactagtttcgaacctgagtgattcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactct |
28402214 |
T |
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| Q |
218 |
gataacataagaataagatttgtcgagttctgtaaaaagttctcgatcacaagttaaatgatctctgct |
286 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
28402213 |
gatcacataagaataagatttgtcgagttgtgtaaaaagttctcgatcacaagttaaatgatctgtgct |
28402145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 19931367 - 19931106
Alignment:
| Q |
18 |
gttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattcttcaacaattcatgaacacttaaaagattttcagaaatttgagga |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19931367 |
gttttggtcattaatcacacaattttcatgttcaaataacactttgtagccattattcaacaattcaggaacacttaaaagattttcagaaatttgagga |
19931268 |
T |
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| Q |
118 |
acatatataaaacattcaaaactagtttcgaacctgagtaattcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactct |
217 |
Q |
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| T |
19931267 |
acatata--aaacattcaaaactagtttcgaacctgagtgattcttaaatacaactgttccaatgccttctgctgtaatatttgctccattcgcaactgt |
19931170 |
T |
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| Q |
218 |
gataacataagaataagatttgtcgagttctgtaaaaagttctcgatcacaagttaaatgatct |
281 |
Q |
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|| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19931169 |
catcacagaagaataagatttgtcgagttctgtaaaaaaatctcgatcacaagttaaatgatct |
19931106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 19133933 - 19134189
Alignment:
| Q |
18 |
gttttggtcataaatcacacaattttcatgttcaaataacactttgtagccattcttcaacaattcatgaacacttaaaagattttcagaaatttgagga |
117 |
Q |
| |
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||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||| |
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| T |
19133933 |
gttttggtcattaatcatacaactttcatgttcaaataacactttgtaaccattcttcaacaattgaggaacacttaaaagattttcggaaatttgagga |
19134032 |
T |
|
| Q |
118 |
acatatataaaacattcaaaactagtttcgaacctgagtaattcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactct |
217 |
Q |
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|||||| |||||||||||||||||||| |||||||| | |||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
19134033 |
acatat--aaaacattcaaaactagtttggaacctgaatgattcttaaatactattgttccaatgccttctgatgtaatttctgctccattcgcaactct |
19134130 |
T |
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| Q |
218 |
gataacataagaataagatttgtcgagttctgtaaaaagttctcgatcacaagttaaat |
276 |
Q |
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|| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
19134131 |
aatcacagaagaataagatttgtcgagttcggtaaaaacttctcgatcacaagttaaat |
19134189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 32531673 - 32531514
Alignment:
| Q |
30 |
aatcacacaattttcatgttcaaataacactttgtagccattcttcaacaattcatgaacacttaaaagattttcagaaatttgaggaacatatataaaa |
129 |
Q |
| |
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||||||||| || ||||||||||| |||||||||||||| ||| ||||||| | | |||||||||||||| ||| | || || |||| | |||||||| |
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| T |
32531673 |
aatcacacacttctcatgttcaaacaacactttgtagcctttcgtcaacaactgaggaacacttaaaagactttgattaagtttaggagc--atataaaa |
32531576 |
T |
|
| Q |
130 |
cattcaaaactagtttcgaacctgagtaattcttaaatacaactgttccaatgccttctact |
191 |
Q |
| |
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||||| ||| | |||| ||||||||| | | |||| || |||||| ||||||||||||||| |
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| T |
32531575 |
cattcgaaatttgtttataacctgagtgacttttaactaaaactgtcccaatgccttctact |
32531514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 30759645 - 30759738
Alignment:
| Q |
122 |
atataaaacattcaaaactagtttcgaacctgagtaattcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaact |
215 |
Q |
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||||||||||||||||| ||||||| ||||||||| ||| ||| | || |||||||||||||||||| ||| |||||||||||||||| |
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| T |
30759645 |
atataaaacattcaaaattagtttcaaacctgagtgatttctaattgtaattgttccaatgccttctacctcaataggtgctccattcgcaact |
30759738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 30749394 - 30749458
Alignment:
| Q |
126 |
aaaacattcaaaactagtttcgaacctgagtaattcttaaatacaactgttccaatgccttctac |
190 |
Q |
| |
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||||||||||||| ||||||| ||||||||| || |||| | ||||||||||| ||||||||| |
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| T |
30749394 |
aaaacattcaaaattagtttcaaacctgagtgatgtttaattgtaactgttccaaagccttctac |
30749458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 5291891 - 5291822
Alignment:
| Q |
34 |
acacaattttcatgtt-caaataacactttgtagccattcttcaacaattcatgaacacttaaaagattt |
102 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||| | ||||| || | |||||||||||||||| |
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| T |
5291891 |
acacaatttttatgtttcaaatagcactttgtagccattttgcaacatttgaacaacacttaaaagattt |
5291822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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