View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_low_11 (Length: 252)
Name: NF8565_low_11
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 18719969 - 18719749
Alignment:
| Q |
19 |
atagagtttccaacaagcatcataagattaacacccatcatttaataatttcaacattgattaaagatttgtgtacttgcattgtgcttaaccaaatacc |
118 |
Q |
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| T |
18719969 |
atagagtttccaacaagcatcataagattaacacccatcatttaataatttcaacattgattaaagatttgtgtacttgcattctgcttaaccaaatacc |
18719870 |
T |
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| Q |
119 |
attgcaccttttattttcaagtaaagtagagccattcaatgtatgtaaatgtcctccaactccacttcttaaataggatgcatctgaactactagctaag |
218 |
Q |
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| T |
18719869 |
attgcaccttttgttttcaagtaaagtagagccattcaatgtatgtaaatgtcctccaactccacttcttaaataggatgcatctgaactactagctaag |
18719770 |
T |
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| Q |
219 |
gctgctgccatatgatcttct |
239 |
Q |
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| T |
18719769 |
gctgctgccatatgatcttct |
18719749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 2894330 - 2894237
Alignment:
| Q |
144 |
gtagagccattcaatgtatgtaaatgtcctccaactccacttcttaaataggatgcatctgaactactagctaaggctgctgccatatgatctt |
237 |
Q |
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| T |
2894330 |
gtagagccattcaatgtatgcaaatgtcctccaactccacttcttaaataggatgcatctgaactactagctaaggctgctgccatatgatctt |
2894237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 2889794 - 2889748
Alignment:
| Q |
191 |
ataggatgcatctgaactactagctaaggctgctgccatatgatctt |
237 |
Q |
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| T |
2889794 |
ataggatgcatctgaactactagctatggctgctgccatatgatctt |
2889748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 2894745 - 2894696
Alignment:
| Q |
95 |
ttgcattgtgcttaaccaaataccattgcaccttttattttcaagtaaag |
144 |
Q |
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||||||||||||| ||||||||| |||||||||| | ||||||||||||| |
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| T |
2894745 |
ttgcattgtgcttgaccaaatacgattgcaccttctgttttcaagtaaag |
2894696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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