View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_low_12 (Length: 245)
Name: NF8565_low_12
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 49019965 - 49019740
Alignment:
| Q |
20 |
aacgtatgcatcaaagtaagagttaccaactgctgaaaccactgtgcattgaacagcttctaacacttgttgtattgattcaaaatcaatttttcttaga |
119 |
Q |
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| T |
49019965 |
aacgtatgcatcaaagtaagagttaccaactgctgaaaccactgtgcattgaacagcttctaaaacttgttgtattgattcaaaatcaatttttcttaga |
49019866 |
T |
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| Q |
120 |
cctagttggaaggtaattggatcatctccaaagaaatgaagttccaaccgtttctcaaatccttcaaagccagatacagccatttggggtgtagagggta |
219 |
Q |
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| T |
49019865 |
cctagttggaaggtaattggatcatctccaaagaaatgaagttccaaccgtttctcaaatccttcaaagccagatacagccatttggggtgtagagggta |
49019766 |
T |
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| Q |
220 |
atgaataagttggatgaaacagagaa |
245 |
Q |
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| T |
49019765 |
atgaataagttggatgaaacagagaa |
49019740 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 7081844 - 7082019
Alignment:
| Q |
27 |
gcatcaaagtaagagttaccaactgctgaaaccactgtgcattgaacagcttctaacacttgttgtattgattcaaaatcaatttttcttagacctagtt |
126 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||| || | |||||| || |||||||| |||| ||||||||| ||||||| |
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| T |
7081844 |
gcatcaaagtaagagtttccaactgctgaaacaactgtgcattgaacagcttgtaggatttgttgaatggattcaaactcaagttttcttaggcctagtt |
7081943 |
T |
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| Q |
127 |
gg------aaggt---aattggatcatctccaaagaaatgaagttccaaccgtttctcaaatccttcaaagccaga |
193 |
Q |
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| T |
7081944 |
ggtgattaatggttggatttggatcatcaccaaagaaatgaagttctaatcttttttcaaagccttcaaaaccaga |
7082019 |
T |
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