View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8565_low_19 (Length: 201)

Name: NF8565_low_19
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8565_low_19
NF8565_low_19
[»] chr4 (2 HSPs)
chr4 (19-201)||(30775172-30775354)
chr4 (127-199)||(35132476-35132548)
[»] chr7 (16 HSPs)
chr7 (57-201)||(8585772-8585916)
chr7 (78-182)||(8616660-8616764)
chr7 (127-199)||(8659391-8659463)
chr7 (126-199)||(6789539-6789612)
chr7 (127-199)||(8636411-8636483)
chr7 (127-201)||(3147292-3147366)
chr7 (127-201)||(8654478-8654552)
chr7 (127-199)||(1301488-1301560)
chr7 (129-201)||(10494440-10494512)
chr7 (128-199)||(7877801-7877872)
chr7 (66-101)||(8576293-8576328)
chr7 (66-101)||(17260208-17260243)
chr7 (66-101)||(17267906-17267941)
chr7 (138-199)||(8559372-8559433)
chr7 (126-199)||(8646904-8646977)
chr7 (129-201)||(8667449-8667521)
[»] chr2 (5 HSPs)
chr2 (57-201)||(16662058-16662202)
chr2 (63-201)||(16657583-16657721)
chr2 (127-199)||(43625440-43625512)
chr2 (72-199)||(7542199-7542326)
chr2 (162-201)||(14703471-14703510)
[»] chr1 (2 HSPs)
chr1 (127-199)||(4678626-4678698)
chr1 (126-199)||(15595061-15595134)
[»] chr8 (1 HSPs)
chr8 (68-199)||(43744785-43744916)
[»] chr5 (1 HSPs)
chr5 (126-201)||(28219945-28220020)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 30775172 - 30775354
Alignment:
Q  19 cttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttgg 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30775172 cttgaaataaattatctatctcaacaaatgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttgg 30775271  T
Q  119 atcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    ||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30775272 attcccggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtaattcaacattctgttatcaaagtcctctcccc 30775354  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 35132476 - 35132548
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||||| || ||||||||  |||| || || | |||||||||||||| ||||||||||||||||||||||||    
T  35132476 taatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctcc 35132548  T

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Target: chr7 (Bit Score: 73; Significance: 1e-33; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 8585916 - 8585772
Alignment:
Q  57 ttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaatt 156  Q
    ||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||||||| |     ||||| ||||| ||||||||  |||||||||    
T  8585916 ttgaaagaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaatt 8585817  T
Q  157 cctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  8585816 cctcaacaaagtagttcaacattctgttatcaaagtcccctcccc 8585772  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 8616660 - 8616764
Alignment:
Q  78 gccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaaca 177  Q
    |||||||| ||||||||| ||||| | ||||| | |||||| |  |  ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  8616660 gccttttcgcatgcagttttcaaccgcctcaacgatcttgggttcctagtaatatccacattgttcttcctcttaaaatcctcaacaaagtagttcaaca 8616759  T
Q  178 ttctg 182  Q
    |||||    
T  8616760 ttctg 8616764  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 8659391 - 8659463
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    |||||||||| || |||||| | || || ||||||||||||||||||| ||||||| ||||||||||||||||    
T  8659391 taatgtccactttattcttctttttgaactcctctacaaagtagttcaccattctgctatcaaagtcctctcc 8659463  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 6789539 - 6789612
Alignment:
Q  126 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||| ||||| ||||||||| ||||||| |||||| |||||||||| | || || ||||||||||||||||||    
T  6789539 gtaatatccactttgttcttcctcttaaactcctctgcaaagtagtttaccaatcggttatcaaagtcctctcc 6789612  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 8636483 - 8636411
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||||| || ||||||||| |||| | |||||||||||| || | || ||||||||||||||||||||||||    
T  8636483 taatgtctaccttgttcttcctcttgatttcctctacaaaatattccaccattctgttatcaaagtcctctcc 8636411  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 3147292 - 3147366
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    ||||||| || ||||||||| ||||||| |||  | |||||||||||| ||| || |||||||||||||||||||    
T  3147292 taatgtctaccttgttcttcttcttaaactcccgtgcaaagtagttcaccatcctattatcaaagtcctctcccc 3147366  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 8654478 - 8654552
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    |||| ||||| || |||||| | || || |||||||||||||||| || |||||||||||||||||| |||||||    
T  8654478 taatttccactttattcttctttttgaactcctctacaaagtagtacaccattctgttatcaaagtcttctcccc 8654552  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 1301488 - 1301560
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    |||||||||| || |||||| |  | || ||||||||||||||| ||| |||||| |||||||||||||||||    
T  1301488 taatgtccactttattcttctttctgaactcctctacaaagtagctcaccattctattatcaaagtcctctcc 1301560  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 10494512 - 10494440
Alignment:
Q  129 atgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    ||||||||||| |||||| | || || ||||| ||||| || |||| |||||||||||| |||||||||||||    
T  10494512 atgtccacgttattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctcccc 10494440  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 7877872 - 7877801
Alignment:
Q  128 aatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||||||| || |||||| ||||||| |||   || || | ||||||||||||||||||||||||||||||    
T  7877872 aatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctcc 7877801  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 8576293 - 8576328
Alignment:
Q  66 agtgtcctttttgccttttcacatgcagttctcaac 101  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8576293 agtgtcctttttgccttttcacaagcagttctcaac 8576328  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 17260208 - 17260243
Alignment:
Q  66 agtgtcctttttgccttttcacatgcagttctcaac 101  Q
    |||||||||||||| |||||||||||||||||||||    
T  17260208 agtgtcctttttgctttttcacatgcagttctcaac 17260243  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 17267906 - 17267941
Alignment:
Q  66 agtgtcctttttgccttttcacatgcagttctcaac 101  Q
    |||||||||||||| |||||||||||||||||||||    
T  17267906 agtgtcctttttgctttttcacatgcagttctcaac 17267941  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 8559372 - 8559433
Alignment:
Q  138 ttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||||||| ||| ||| || | ||||||||  |||| ||||||||||||||||||||||||    
T  8559372 ttgttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaagtcctctcc 8559433  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 8646904 - 8646977
Alignment:
Q  126 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||||||||| ||||||||| | |||||||| | | |||||| || || ||||||  ||||||||||||||||    
T  8646904 gtaatgtccaccttgttcttcttgttaaattcttgtgcaaagtggtccaccattctactatcaaagtcctctcc 8646977  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 8667449 - 8667521
Alignment:
Q  129 atgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    |||||||| || |||||| | || || ||||| ||||| ||||||| |||||||||||| |||||||| ||||    
T  8667449 atgtccactttattcttcttttttaactcctcaacaaaatagttcaccattctgttatcgaagtcctcgcccc 8667521  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 16662202 - 16662058
Alignment:
Q  57 ttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaatt 156  Q
    ||||| |||||||||||||| ||||||||||| | ||||||||||   ||||| ||||||||||  |  || || ||||| ||||||||| | |||||||    
T  16662202 ttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaatt 16662103  T
Q  157 cctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    | |  ||||||||||||||||||||||||||||||||||||||||    
T  16662102 ctttcacaaagtagttcaacattctgttatcaaagtcctctcccc 16662058  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 16657721 - 16657583
Alignment:
Q  63 gagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctcta 162  Q
    ||||||||||| |||||| | ||||||||||||||||||   ||||| |||||||  |  |   | |||||||| || |||||| | | ||| |||||||    
T  16657721 gagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttcttttgaaactcctcta 16657622  T
Q  163 caaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  16657621 caaagtagttcaccgttctgttatcaaagtcctctcccc 16657583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 43625440 - 43625512
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    |||| ||||| ||||||||| ||| |||||| ||| |||||||||||| |||||| | |||||||||||||||    
T  43625440 taatatccacattgttcttcttctcaaattcttctgcaaagtagttcaccattctatcatcaaagtcctctcc 43625512  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 7542199 - 7542326
Alignment:
Q  72 ctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagt 171  Q
    ||||||||| | ||||| ||||||||||||   ||||| ||| ||||||  |   |||||||||| ||||||||  |||| || || | |||||||||||    
T  7542199 ctttttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagt 7542298  T
Q  172 tcaacattctgttatcaaagtcctctcc 199  Q
    ||  |||||| ||||||||||| |||||    
T  7542299 tcgccattctattatcaaagtcttctcc 7542326  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 14703471 - 14703510
Alignment:
Q  162 acaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  14703471 acaaagtagttcaccattctgttatcgaagtcctctcccc 14703510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 4678698 - 4678626
Alignment:
Q  127 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    |||||||||| || |||||| | || || ||||||||||||||||||| ||||||||||||||||||||||||    
T  4678698 taatgtccacattattcttctttttgaactcctctacaaagtagttcaccattctgttatcaaagtcctctcc 4678626  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 15595061 - 15595134
Alignment:
Q  126 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||| ||||| |||||||||||||| |||||||   |||||||||| | ||||||||||||||||||||||||    
T  15595061 gtaatatccactttgttcttcgtcttgaattcctgcgcaaagtagttgaccattctgttatcaaagtcctctcc 15595134  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 43744785 - 43744916
Alignment:
Q  68 tgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaag 167  Q
    ||||||||||||  |||| ||||| |||||||||   || || |||||||| |  |  ||||||||||| ||||||||| ||||||| |||||| | |||    
T  43744785 tgtcctttttgctctttcgcatgctgttctcaacctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaag 43744884  T
Q  168 tagttcaacattctgttatcaaagtcctctcc 199  Q
    ||||||| ||| || |||||||| ||||||||    
T  43744885 tagttcaccatcctattatcaaaatcctctcc 43744916  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 28219945 - 28220020
Alignment:
Q  126 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagtcctctcccc 201  Q
    ||||||||||| ||||||||| ||||||| |||||| | |||||||||| ||| ||  ||||||||||||||||||    
T  28219945 gtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctactatcaaagtcctctcccc 28220020  T

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