View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_low_2 (Length: 420)
Name: NF8565_low_2
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 52096556 - 52096155
Alignment:
| Q |
1 |
gtttttgataaaatgcttgttaaagatgttgctacttggagtgctatgattttgggtttggctattaatgggaataataaaatggcactggaactgtttg |
100 |
Q |
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| T |
52096556 |
gtttttgataaaatgcttgttaaagatgttgctacttggagtgctatgattttgggtttggctattaatgggaataataaaatggcactggaactgtttg |
52096457 |
T |
|
| Q |
101 |
aaaagatggagaaggttggaccaaaacctaatgaggttactttcgttggggttctcaccgcttgcaatcataaaagtttgtttggggagtcatcgcagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
52096456 |
aaaagatggagaaggttggaccaaaacctaatgaggttactttcgttggggttctcaccgcttgcaatcataaaagtttgtttggggagtcatcacggtt |
52096357 |
T |
|
| Q |
201 |
atttggaattatgagtgaaaaatataacatcacaccatcaattgaacactatggatgcatcgttgatattttggctcgaagcggacaagtgaaaaaggcc |
300 |
Q |
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| T |
52096356 |
atttggaattatgagtgaaaaatataacatcacaccatctattgaacactatggatgcatcgttgatattttggctcgaagcggacaagtgaaaaaggcc |
52096257 |
T |
|
| Q |
301 |
ttaacttttattaatagtatgcatattgaaccagatggagccatatgggggtctttgctcaatggatgtttgatgcatggtcattatgaattaggacaga |
400 |
Q |
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| T |
52096256 |
ttaatttttattaatagtatgcatattgaaccagatggagccatatgggggtctttgctcaatggatgtttgatgcatggtcattatgaattaggacaga |
52096157 |
T |
|
| Q |
401 |
aa |
402 |
Q |
| |
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|| |
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| T |
52096156 |
aa |
52096155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 36412064 - 36411663
Alignment:
| Q |
1 |
gtttttgataaaatgcttgttaaagatgttgctacttggagtgctatgattttgggtttggctattaatgggaataataaaatggcactggaactgtttg |
100 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36412064 |
gtttttaataaaatgcctgttaaagatgttgctacatggagtgctatgattttgggtttggctattaacgggaataataaaatggcactggaactgtttg |
36411965 |
T |
|
| Q |
101 |
aaaagatggagaaggttggaccaaaacctaatgaggttactttcgttggggttctcaccgcttgcaatcataaaagtttgtttggggagtcatcgcagtt |
200 |
Q |
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| T |
36411964 |
agaagatggagaaggttggaccaaaacctaatgaggttactttcgttggggttcttaccgcttgcaatcataaaagtttgtttggggagtcagctcggtt |
36411865 |
T |
|
| Q |
201 |
atttggaattatgagtgaaaaatataacatcacaccatcaattgaacactatggatgcatcgttgatattttggctcgaagcggacaagtgaaaaaggcc |
300 |
Q |
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| T |
36411864 |
atttggaattatgagtgaaaaatataacatcacaccatctattgaacactatggatgtgttgttgatgttttggctcgaagcggacaagtgaaaaaggcc |
36411765 |
T |
|
| Q |
301 |
ttaacttttattaatagtatgcatattgaaccagatggagccatatgggggtctttgctcaatggatgtttgatgcatggtcattatgaattaggacaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
36411764 |
ttaacttttattaatagtatgcatattgaaccagatggagccatatgggggtctttgctcaatggatgtttgatgcatggtcattatgaattggggcaga |
36411665 |
T |
|
| Q |
401 |
aa |
402 |
Q |
| |
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|| |
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|
| T |
36411664 |
aa |
36411663 |
T |
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