View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8565_low_3 (Length: 370)
Name: NF8565_low_3
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_low_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 2391427 - 2391616
Alignment:
| Q |
24 |
ctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391427 |
ctaggaagttcgattttgtgctagatgaagataataattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatt |
2391526 |
T |
|
| Q |
124 |
tattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgatatactccatagtgataattcacagg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2391527 |
tattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgatatactccatagtgataattcccagg |
2391616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 2382915 - 2383070
Alignment:
| Q |
36 |
attttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatct |
135 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||| ||||||| |
|
|
| T |
2382915 |
attttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaattccatcgatagccaaattattaattatct |
2383014 |
T |
|
| Q |
136 |
ccacagcaaccctcgaccttt--cagaggagaagaataacctagatggtgatgata |
189 |
Q |
| |
|
| || |||| | ||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
2383015 |
tcgcaaaaaccgtggacctttcacagaggagaagaataacttagatggtaatgata |
2383070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 2380558 - 2380714
Alignment:
| Q |
35 |
gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc |
134 |
Q |
| |
|
||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||| |
|
|
| T |
2380558 |
gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc |
2380657 |
T |
|
| Q |
135 |
tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgata |
189 |
Q |
| |
|
||| || |||| | ||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
2380658 |
tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgata |
2380714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 2381814 - 2381927
Alignment:
| Q |
77 |
aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc |
174 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||| ||||||||||| ||||||||| || ||||| | ||||||| ||||| ||||||||||| |
|
|
| T |
2381814 |
aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact |
2381913 |
T |
|
| Q |
175 |
tagatggtgatgat |
188 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
2381914 |
tagatggtaatgat |
2381927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 8682843 - 8682690
Alignment:
| Q |
217 |
tgctcgttcactggctgtggtgctggcttcacttcctctacttttgtgccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8682843 |
tgctctttcactggctgtggtgctggcttcacttcctctacttttgagccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
8682744 |
T |
|
| Q |
317 |
cacctccattttgagccatgttttgtcagcagaaacaaagacaaatgtagcaaa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8682743 |
cacctccattttgagccatgttttgtcagcagaaacaaagacaaatgtagcaaa |
8682690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University