View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_low_4 (Length: 365)
Name: NF8565_low_4
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 48891039 - 48891372
Alignment:
| Q |
18 |
atgacatagttgtacttagagagtctagagaagaaataaagaggaggttaaatacttggagacaagaaaagaataaatttcaattaaattataagatgta |
117 |
Q |
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| T |
48891039 |
atgacatagttgtatttagagagtctagagaagaaataaagaggaggttaaatacttggagataagaaaaggataaatttcaattaactacttag----- |
48891133 |
T |
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| Q |
118 |
tgtgataagggaaagtcgaaagaatgacgttataaaattnnnnnnn-ggaattaggttttgagacattttagccaccgtcaagaaaaatgtttgacgaga |
216 |
Q |
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| T |
48891134 |
--tgataagggaaagtcgaaagaatgacgttataaaatcaaaaaaaaggaattaggttttgagacattttagccaccgtcaagaaaaatgtttgacgaga |
48891231 |
T |
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| Q |
217 |
tctagtaagtgttcatgagacatttctttgttgcnnnnnnncacagaaatgcgcgctcattttaaataatcgaaatacatgtcaaccatatcacttggat |
316 |
Q |
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| T |
48891232 |
tctagtaagtgttcatgagacatttctctgttgcaaaaaaacacagaaatgcgc--tcattttaaataatcgaaatacatgtcaaccatatcacttggat |
48891329 |
T |
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| Q |
317 |
gtaatgacggatgtccttttcgaaataaatgtgaaccaccaaa |
359 |
Q |
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| T |
48891330 |
gtaatgacggatgtccttttcgaaataaatgtgaaccaccaaa |
48891372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 269 - 359
Target Start/End: Complemental strand, 34559505 - 34559415
Alignment:
| Q |
269 |
gcgctcattttaaataatcgaaatacatgtcaaccatatcacttggatgtaatgacggatgtccttttcgaaataaatgtgaaccaccaaa |
359 |
Q |
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| T |
34559505 |
gcgctcattttaaatagttgaaatacatgtcaaccagatcacttggatgtagtggcgaatatccttttcgaaataaatatgaaccaccaaa |
34559415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 34558747 - 34558578
Alignment:
| Q |
183 |
ttttagccaccgtcaagaaaaatgtttgacgagatctagtaagtgttcatgagacatttctttgttgcnnnnnnncaca-gaaatgcgcgctcattttaa |
281 |
Q |
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| T |
34558747 |
ttttggccactgtcaagagaaaagtttgacgagatcaagtaaatgttcttgagacatttctttgttgcaaaaaaacacacgagaattgcgttcattttaa |
34558648 |
T |
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| Q |
282 |
ataatcgaaatacatgtcaaccatatcacttggatgtaatgacggatgtccttttcgaaataaatgtgaac |
352 |
Q |
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| T |
34558647 |
ataatcgaaatacatatcaaccagatcacttgggtgtaatg-gtaatgtccttttcgagataaatgtgaac |
34558578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 359
Target Start/End: Complemental strand, 34560014 - 34559785
Alignment:
| Q |
126 |
gggaaagtcgaaagaatgacgttataaaattnnnnnnnggaattaggttttgagacattttagccaccgtcaagaaaaatgtttgacgagatctagtaag |
225 |
Q |
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| T |
34560014 |
gggaaagttaaaagaatgacgttataaaat-caacaaaggaattaggtttctagac-ttttagcaaccatcaagaaaaaagtttgacatgatcaagtaaa |
34559917 |
T |
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| Q |
226 |
tgttcatgagacatttctttgttgcnnnnnnncac-agaaatgcgcgctcattttaaataatcgaaatacatgtcaaccatatcacttggatgtaatgac |
324 |
Q |
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| T |
34559916 |
tgttcatcaaacatttcgttgttgcaaaaaaacacgagaattgtga--tcattttaaataattgaaatacatgttaacaagatcacttggatgtaatg-g |
34559820 |
T |
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| Q |
325 |
ggatgtccttttcgaaataaatgtgaaccaccaaa |
359 |
Q |
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| T |
34559819 |
agatgcccttttcgaaataaatgtgaagcaccaaa |
34559785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 320
Target Start/End: Complemental strand, 34559170 - 34559034
Alignment:
| Q |
183 |
ttttagccaccgtcaagaaaaatgtttgacgagatctagtaagtgttcatgagacatttctttgttgcnnnnnnncac-agaaatgcgcgctcattttaa |
281 |
Q |
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| T |
34559170 |
ttttagccactatcaagagaaaagtttgacgggatcaagtaaatgttcatgagacatttctttgttccaaaaaaacacgagaatt--gcactcattttaa |
34559073 |
T |
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| Q |
282 |
ataatcgaaatacatgtcaaccatatcacttggatgtaa |
320 |
Q |
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| T |
34559072 |
ataattgaaatacatgttaaccagattacttggatgtaa |
34559034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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