View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8565_low_7 (Length: 275)
Name: NF8565_low_7
Description: NF8565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8565_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 43523228 - 43522971
Alignment:
| Q |
11 |
gtgagaagaatattctgtaaagataatagtttatccat--------atattacactggatatcgtcttgaaatgtggggtaactttgaatgtgatgaata |
102 |
Q |
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| T |
43523228 |
gtgaaaagaatattctgtaaagataatagtttatccatttatccatatattacactggatatcgtcttgaaatgtggggtaactttgaatgtgatgaata |
43523129 |
T |
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| Q |
103 |
atataggaagcaagcatgtgacaatgtgaggtgtgttctgagacataagcatatgaaaccgatcgagtcagcatgtactaaatcatcaaacaacacgtgt |
202 |
Q |
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| T |
43523128 |
atataggaagcaagcatgtgacaatgtgaggtgtgttctgagacataagcatatgaaaccgatcgagtcagcatgtactaaatcatcaaacaacacgtgt |
43523029 |
T |
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| Q |
203 |
catgagtagatgagactaaaacaaaagaaaacccacactcatacatgcgtggagttat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43523028 |
catgagtagatgagactaaaacaaaagaaaacccacactcatacatgcgtggagttat |
43522971 |
T |
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