View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8566_high_10 (Length: 404)
Name: NF8566_high_10
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 31204419 - 31204033
Alignment:
| Q |
1 |
aaatcctgaaaccaaacagacacatcaatgaaggaaacaaagggttgtagattgttacttatccctttaccattacaaggacacataaatccaatgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31204419 |
aaatcctgaaaccaaacagacacatcaatgaaggaaacaaagggttgtagattgttacttatccctttaccattacaaggacacataaatccaatgcttc |
31204320 |
T |
|
| Q |
101 |
aacttgcacaaatcctttactcaaatggtttttccataaccatcattcacacaagttttaattcccttaacccatcaaactatcctcacttcaacttctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31204319 |
aacttgcacaaatcctttactcaaatggtttttccataaccatcattcacacaagttttaattcccttaacccatcaaactatcctcacttcaacttctg |
31204220 |
T |
|
| Q |
201 |
ctgtatcaaagatggtttaagtgaatcttctgcttcaaatctcttgaatttggtagttgaactcaacattagatgtgcgaagccattcaaggagtgctta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31204219 |
ttgtatcaaagatggtttaagtgaatcttctgcttcaaatctcttgaatttggtagttgaactcaacattagatgtgtgaagccattcaaggagtgctta |
31204120 |
T |
|
| Q |
301 |
ggtaaactactatgtgatgtatctgaggaacctattgcttgcttgatatcagatgctatgtgttatttcactcaagatgttgctaca |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31204119 |
ggtaaactactatgtgatgtatctgaggaacctattgcttgcttgatatcagatgctatgtgttatttcactcaagatgttgctaca |
31204033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 30848234 - 30848202
Alignment:
| Q |
70 |
ccattacaaggacacataaatccaatgcttcaa |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
30848234 |
ccattacaaggtcacataaatccaatgcttcaa |
30848202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University