View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_high_13 (Length: 380)
Name: NF8566_high_13
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 30543235 - 30543582
Alignment:
| Q |
18 |
ataaagtcccaagattaaataaaaagtgagtttagctcaatttttaaaactaaactactagttagtactcacaacttttgataacatctctccaactgct |
117 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30543235 |
ataaagtgccaagattaaataaaaagtgagttgagctcaatttttaaaactaaactactagttagtactcacaacttttgataacatctctccaactgct |
30543334 |
T |
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| Q |
118 |
ttgatgaaaccatcttacaattttgtctaaatacatgcctatgcagaaatttagatgaattgagtcttgaagtctcaccgaaattcataaaacacttaca |
217 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
30543335 |
ttgatgaaatcatcttacaattttgactaaatacatgcctatgcagaaatttaggtgaattgagtctcgaagtctcaccaaaattcataaaacgcttaca |
30543434 |
T |
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| Q |
218 |
aagatacttatatattactatttatcaacaaagttcttatgcaattgagctgaattcacacatttataggatatgatgataaccaaacttttttatcaaa |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
30543435 |
aagatacttatatattactatttgtcaacaaagttcttatgcaattgagctgaattcacacatttatagggtatgatgataaccaaatttttttatcaaa |
30543534 |
T |
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| Q |
318 |
tgaaccaacctcaaaatgaagcaatcacatgggagttttttcccttag |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30543535 |
tgaaccaacctcaaaatgaagcaatcacatgggagttttttcccttag |
30543582 |
T |
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