View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_high_17 (Length: 322)
Name: NF8566_high_17
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 48593753 - 48593937
Alignment:
| Q |
1 |
acacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593753 |
acacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt |
48593852 |
T |
|
| Q |
101 |
cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt |
185 |
Q |
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| T |
48593853 |
cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt |
48593937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 48598364 - 48598548
Alignment:
| Q |
1 |
acacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598364 |
acacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt |
48598463 |
T |
|
| Q |
101 |
cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt |
185 |
Q |
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| T |
48598464 |
cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt |
48598548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 48593931 - 48593971
Alignment:
| Q |
202 |
aagagtttatttggatagagagtttaagaaggtagagttca |
242 |
Q |
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| T |
48593931 |
aagagtttgtttggatagagagtttaagaaggtagagttca |
48593971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 48598542 - 48598582
Alignment:
| Q |
202 |
aagagtttatttggatagagagtttaagaaggtagagttca |
242 |
Q |
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| T |
48598542 |
aagagtttgtttggatagagagtttaagaaggtagagttca |
48598582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 49946740 - 49946712
Alignment:
| Q |
285 |
aaataaattaaatgtgattgaagtattat |
313 |
Q |
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|
| T |
49946740 |
aaataaattaaatgtgattgaagtattat |
49946712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 30891154 - 30891119
Alignment:
| Q |
278 |
tttttataaataaattaaatgtgattgaagtattat |
313 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
30891154 |
tttttttaaataaattaaatgtgattgaagtattat |
30891119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 45741982 - 45742010
Alignment:
| Q |
285 |
aaataaattaaatgtgattgaagtattat |
313 |
Q |
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| T |
45741982 |
aaataaattaaatgtgattgaagtattat |
45742010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 24560309 - 24560337
Alignment:
| Q |
285 |
aaataaattaaatgtgattgaagtattat |
313 |
Q |
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| T |
24560309 |
aaataaattaaatgtgattgaagtattat |
24560337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 20545801 - 20545829
Alignment:
| Q |
285 |
aaataaattaaatgtgattgaagtattat |
313 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20545801 |
aaataaattaaatgtgattgaagtattat |
20545829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 29525885 - 29525857
Alignment:
| Q |
285 |
aaataaattaaatgtgattgaagtattat |
313 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29525885 |
aaataaattaaatgtgattgaagtattat |
29525857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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