View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_high_19 (Length: 296)
Name: NF8566_high_19
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 30588215 - 30587941
Alignment:
| Q |
17 |
atgaacaatctttacaaatactgatgtttgttaattatgcatgtgctgaaaattaggccttgtcttgtcccatttccttcgcatctttttcaattgaaga |
116 |
Q |
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| T |
30588215 |
atgaacaatctttacagatactgatgtttgttaattatgcatgtgctgaaaattaggccttgtcttgtcccatttccttcgcatctttttcaattgaaga |
30588116 |
T |
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| Q |
117 |
aagttgatcttggagattgttcttgtttgcaagatacttcctccgcatgggactataaacaacatttcacttatttcattgaataacggtggcggagtca |
216 |
Q |
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| T |
30588115 |
aagttgatcttggagattgttcttgtttgcaagatactccctccgcatgggactataaacaacatttcacttatttcattgaacaacggtggtggagtca |
30588016 |
T |
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| Q |
217 |
gaaacaaaaaacaacttggatggatcattgaaataaattataaacataaaattaatgttgtaataaacaccaaac |
291 |
Q |
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| T |
30588015 |
gaaacaaaaaacaactcgggtggatcactaaaataaattataaatataaaattaatgttgtaataaacatcaaac |
30587941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 46714595 - 46714647
Alignment:
| Q |
28 |
ttacaaatactgatgtttgttaattatgcatgtgctgaaaattaggccttgtc |
80 |
Q |
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| T |
46714595 |
ttacaaatactgctatttgttcaatatgcaggtgctgaaaattaggcgttgtc |
46714647 |
T |
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