View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8566_high_2 (Length: 816)
Name: NF8566_high_2
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 19 - 744
Target Start/End: Original strand, 46498005 - 46498732
Alignment:
| Q |
19 |
agcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcgatgctctctctctttccnnnnnnnattttctatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46498005 |
agcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcgatgctctctctctttcctttttt-attttctatt |
46498103 |
T |
|
| Q |
119 |
tcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttattttaatttaaacaagagtgctatttgcaattgaaggta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498104 |
tcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttattttaatttaaacaagagtgctatttgcaattgaaggtg |
46498203 |
T |
|
| Q |
219 |
agttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgttccactatgttcagcccatgtgccagaatgatgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498204 |
agttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgttccactatgttcagcccatgtgccagaatgatgt |
46498303 |
T |
|
| Q |
319 |
tcgtatatacgggtaacataactacccaaaggattgaaaggaacgaagctagggatattaacacttgaaccaatattaattttaatttgtatttcatagt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498304 |
tcgtatatacggataacataactacccataggattgaaaggaacgaagctagggatattaacacttgaaccaatattaattttaatttgtatttcatagt |
46498403 |
T |
|
| Q |
419 |
ttataatcatgaagtgtagttcaattataaaatatattttgcagtcttatataatgacttaaa---ggataatacatagtatacgtatggaattagctta |
515 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
46498404 |
ttataatcatgaggtgtagttcaattataaaatatattttgcagtcttatataatgacttaaaaggggataatacatagtatacgtatggaattggctta |
46498503 |
T |
|
| Q |
516 |
atatctaatgaaaatataatatcttgcaacatcaaccatttttgtaaggatattttaaaattgatgatataccatgaaaaagatagtgatatctctcatc |
615 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498504 |
atatccaatgaaaatataatatcttgcaacatcaaccacttttgtaaggatattttaaaattgatgatataccatgaaaaagatagtgatatctctcatc |
46498603 |
T |
|
| Q |
616 |
aaatgataattaggagtagggatgacaaaagtgactaacgctccctaattaggagtggaaatacgctgagccgatatcgactttgtaagactagagtcta |
715 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498604 |
aaataataattaggagtagggatgacaaaagtgactaaccctccctaattaggagtggaaatacgctgagccgatatcgactttgtaagactagagtcta |
46498703 |
T |
|
| Q |
716 |
gcttgatgagaaaattcaaggcctaggcc |
744 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46498704 |
gcttgatgagaaaattcaaggcctaggcc |
46498732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 685 - 810
Target Start/End: Original strand, 46498730 - 46498855
Alignment:
| Q |
685 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatacttgt |
784 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46498730 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatactagt |
46498829 |
T |
|
| Q |
785 |
gtatgacctttttgaagtataatcta |
810 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46498830 |
gtatgacctttttgaagtataatcta |
46498855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University